Detailed information of deep learning profile BP000399.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000399.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR841XDW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.17 0.05 0.07 0.18 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4024 4037 3965 3826 4019 4592 4436 4179 4120 4239 3655 4386 4369 3446 3712 3222 5173 6147 2042 7302 1850 1070 1511 1271 161 5766 178 134 1268 6300 654 2736 218 1306 3232 4064 6141 4529 4983 4417 4099 3976 4435 4318 4900 6858 5364 3596 4027 3941 ]
C [ 4520 4352 4457 4527 4533 3884 3942 4483 4582 4568 4457 2975 2806 4362 4561 6988 3756 4441 5079 1882 4954 8431 652 14815 16688 9412 10225 16648 1661 1565 6657 2484 249 1365 7173 5391 2831 4297 3582 3981 4100 3951 3256 2939 3975 3880 4098 4028 3355 5500 ]
G [ 4316 4294 4278 4349 4098 4081 3902 3939 4033 4634 3633 5255 6130 5445 4455 3124 3247 3532 3947 5463 8607 879 12195 592 52 671 120 58 463 6357 8330 1057 15914 12525 2119 3736 5504 4432 4058 4394 4769 5089 5765 6493 4286 3027 3499 3660 5187 4291 ]
T [ 4256 4433 4416 4414 4466 4559 4836 4515 4381 3675 5371 4500 3811 3863 4388 3782 4940 2996 6048 2469 1705 6736 2758 438 215 1267 6593 276 13724 2894 1475 10839 735 1920 4592 3925 2640 3858 4493 4324 4148 4100 3660 3366 3955 3351 4155 5832 4547 3384 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 0.01 -0.04 0.02 -0.08 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.04 -0.01 -0.00 0.02 0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 0.00 0.05 0.13 -0.02 0.13 0.18 0.11 0.14 0.19 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.07 -0.01 0.13 -0.03 -0.04 0.01 -0.06 -0.01 0.00 0.06 0.13 -0.01 0.19 0.12 -0.01 0.04 0.06 0.03 0.01 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.07 0.05 -0.05 0.09 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3670

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 516

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 163

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages