Detailed information of deep learning profile BP000398.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000398.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR840EYN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3867 3461 3291 4729 6214 4296 3195 3977 3264 3576 4165 4424 4468 4539 3921 2504 3848 4777 1630 483 11594 1001 2759 14362 224 6706 1026 305 549 2843 7040 1879 2535 6162 3186 5109 3880 4426 4034 3736 4510 5669 3711 4484 4710 4974 4615 4500 4556 4454 ]
C [ 4160 3019 4301 5371 3592 3331 2788 4124 6970 6083 5434 4768 4510 3888 4426 5583 3596 1875 13501 16597 738 9906 6582 457 58 193 734 142 1033 11888 1271 8376 5661 4138 3520 3288 3195 4657 5648 6511 5386 3549 4714 3932 3900 3889 3954 4146 4357 4324 ]
G [ 4292 5928 5802 3164 4017 4134 3748 3927 2725 3006 3750 4058 3827 3515 4261 2609 5748 7414 1077 144 2637 5918 1275 1580 16968 10252 9673 16667 14268 905 7966 5172 1921 4993 4607 3860 7135 4621 4201 2656 2942 4560 4569 4744 4419 3907 3999 4668 4614 4518 ]
T [ 5032 4943 3957 4087 3528 5590 7620 5323 4392 4686 4002 4101 4546 5409 4743 6655 4159 3285 1143 127 2382 526 6735 952 101 200 5918 237 1501 1715 1074 1924 7234 2058 6038 5094 3141 3647 3468 4448 4513 3573 4357 4191 4322 4581 4783 4037 3824 4055 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.04 -0.03 -0.02 0.09 -0.06 0.05 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.03 -0.02 0.12 0.18 -0.04 0.11 0.06 -0.01 -0.03 -0.07 -0.00 -0.04 -0.04 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.06 -0.03 -0.04 0.08 0.05 -0.03 0.02 0.18 0.13 0.09 0.17 0.12 -0.03 0.13 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.04 -0.08 -0.03 -0.06 0.06 -0.05 -0.05 -0.08 0.02 -0.05 0.00 -0.03 -0.07 -0.02 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1482

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 393

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 112

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages