Detailed information of deep learning profile BP000398.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000398.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR840EYN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4055 3824 4037 4783 4581 4322 4191 4357 3573 4513 4448 3468 3647 3141 5094 6038 2058 7234 1924 1074 1715 1501 237 5918 200 101 952 6735 526 2382 127 1143 3285 4159 6655 4743 5409 4546 4101 4002 4686 4392 5323 7620 5590 3528 4087 3957 4943 5032 ]
C [ 4518 4614 4668 3999 3907 4419 4744 4569 4560 2942 2656 4201 4621 7135 3860 4607 4993 1921 5172 7966 905 14268 16667 9673 10252 16968 1580 1275 5918 2637 144 1077 7414 5748 2609 4261 3515 3827 4058 3750 3006 2725 3927 3748 4134 4017 3164 5802 5928 4292 ]
G [ 4324 4357 4146 3954 3889 3900 3932 4714 3549 5386 6511 5648 4657 3195 3288 3520 4138 5661 8376 1271 11888 1033 142 734 193 58 457 6582 9906 738 16597 13501 1875 3596 5583 4426 3888 4510 4768 5434 6083 6970 4124 2788 3331 3592 5371 4301 3019 4160 ]
T [ 4454 4556 4500 4615 4974 4710 4484 3711 5669 4510 3736 4034 4426 3880 5109 3186 6162 2535 1879 7040 2843 549 305 1026 6706 224 14362 2759 1001 11594 483 1630 4777 3848 2504 3921 4539 4468 4424 4165 3576 3264 3977 3195 4296 6214 4729 3291 3461 3867 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.02 -0.07 -0.03 0.00 -0.05 0.02 -0.08 -0.05 -0.05 0.06 -0.06 -0.03 -0.08 -0.04 -0.01 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.13 -0.03 0.12 0.17 0.09 0.13 0.18 0.02 -0.03 0.05 0.08 -0.04 -0.03 0.06 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.04 -0.04 -0.00 -0.07 -0.03 -0.01 0.06 0.11 -0.04 0.18 0.12 -0.02 0.03 0.05 0.02 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.05 -0.06 0.09 -0.02 -0.03 0.04 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1482

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 393

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 112

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages