Detailed information of deep learning profile BP000397.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in right lobe of liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000397.1
Cell line/tissue: right lobe of liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR839NFL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4570 4175 3976 5396 6798 4975 3986 4636 4025 4289 4854 4944 5028 5093 4541 3088 4525 5480 2116 580 12677 1575 3221 16039 305 7319 1550 426 683 3465 7705 2108 3221 6778 3744 5687 4463 5190 4662 4430 5239 6195 4409 5167 5431 5648 5291 5162 5128 5124 ]
C [ 4739 3873 5127 5996 4367 4210 3574 4946 7601 6823 6053 5615 5314 4854 5398 6660 4358 2448 15001 19191 1302 10296 7512 586 112 231 788 175 1309 13668 1599 9947 6354 4838 4249 3957 3816 5281 6305 7211 6093 4421 5361 4777 4587 4709 4783 5011 5128 5121 ]
G [ 5060 6554 6350 4013 4731 4799 4553 4681 3461 3848 4499 4814 4590 4237 4853 3248 6421 8397 1608 250 2820 7548 1895 2130 19598 12367 11131 19236 16382 1070 9564 5550 2279 5824 5169 4474 8123 5401 5144 3402 3670 5310 5502 5481 5288 4675 4732 5407 5415 5213 ]
T [ 5829 5596 4745 4793 4302 6214 8085 5935 5111 5238 4792 4825 5266 6014 5406 7202 4894 3873 1473 177 3399 779 7570 1443 183 281 6729 361 1824 1995 1330 2593 8344 2758 7036 6080 3796 4326 4087 5155 5196 4272 4926 4773 4892 5166 5392 4618 4527 4740 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.04 0.03 -0.03 -0.02 0.09 -0.06 0.05 -0.06 -0.05 -0.05 -0.02 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.02 0.11 0.18 -0.02 0.11 0.05 -0.00 -0.03 -0.07 -0.01 -0.05 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.04 0.06 -0.03 -0.04 0.07 0.05 -0.02 0.02 0.18 0.13 0.10 0.17 0.12 -0.03 0.12 0.04 -0.01 0.03 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.07 0.03 -0.04 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 103

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages