Detailed information of deep learning profile BP000397.1

  1. Home
  2. Deep Learning Profile > BP000397.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in right lobe of liver using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000397.1
Cell line/tissue: right lobe of liver
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR839NFL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.16 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4740 4527 4618 5392 5166 4892 4773 4926 4272 5196 5155 4087 4326 3796 6080 7036 2758 8344 2593 1330 1995 1824 361 6729 281 183 1443 7570 779 3399 177 1473 3873 4894 7202 5406 6014 5266 4825 4792 5238 5111 5935 8085 6214 4302 4793 4745 5596 5829 ]
C [ 5213 5415 5407 4732 4675 5288 5481 5502 5310 3670 3402 5144 5401 8123 4474 5169 5824 2279 5550 9564 1070 16382 19236 11131 12367 19598 2130 1895 7548 2820 250 1608 8397 6421 3248 4853 4237 4590 4814 4499 3848 3461 4681 4553 4799 4731 4013 6350 6554 5060 ]
G [ 5121 5128 5011 4783 4709 4587 4777 5361 4421 6093 7211 6305 5281 3816 3957 4249 4838 6354 9947 1599 13668 1309 175 788 231 112 586 7512 10296 1302 19191 15001 2448 4358 6660 5398 4854 5314 5615 6053 6823 7601 4946 3574 4210 4367 5996 5127 3873 4739 ]
T [ 5124 5128 5162 5291 5648 5431 5167 4409 6195 5239 4430 4662 5190 4463 5687 3744 6778 3221 2108 7705 3465 683 426 1550 7319 305 16039 3221 1575 12677 580 2116 5480 4525 3088 4541 5093 5028 4944 4854 4289 4025 4636 3986 4975 6798 5396 3976 4175 4570 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.04 0.03 -0.07 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.01 0.04 0.12 -0.03 0.12 0.17 0.10 0.13 0.18 0.02 -0.02 0.05 0.07 -0.04 -0.03 0.06 0.04 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.05 -0.01 -0.07 -0.03 -0.00 0.05 0.11 -0.02 0.18 0.11 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.02 -0.05 -0.05 -0.06 0.05 -0.06 0.09 -0.02 -0.03 0.03 -0.04 -0.01 0.02 -0.02 -0.03 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 103

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages