Detailed information of deep learning profile BP000396.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus squamous epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000396.1
Cell line/tissue: esophagus squamous epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR838RUX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4213 4079 4118 4772 4617 4432 4375 4457 3888 4587 4545 3766 3860 3456 5148 6017 2436 7056 2212 1347 1949 1673 567 5699 246 138 1023 6800 549 2667 139 1118 3216 4348 6633 4909 5495 4644 4245 4267 4664 4276 5485 7826 5595 3599 4067 4009 5117 5243 ]
C [ 4640 4818 4864 4279 4144 4662 4833 4779 4787 3282 3099 4441 4842 7116 4079 4736 5260 2454 5411 8303 1299 13998 16466 9817 11218 17516 1697 1373 6263 2723 158 1146 7777 5720 2610 4316 3594 4007 4178 3860 3107 2777 4070 3838 4257 4201 3228 6049 6197 4405 ]
G [ 4538 4543 4320 4236 4211 4090 4315 4824 3775 5442 6400 5535 4876 3397 3554 3860 4242 5537 8182 1555 11549 1361 460 992 217 92 470 6996 10043 935 17150 14036 1988 3991 6145 4872 4314 4693 5043 5575 6472 7615 4300 2961 3576 3854 5734 4600 3165 4309 ]
T [ 4575 4526 4664 4679 4994 4782 4443 3906 5516 4655 3922 4224 4388 3997 5185 3353 6028 2919 2161 6761 3169 934 473 1458 6285 220 14776 2797 1111 11641 519 1666 4985 3907 2578 3869 4563 4622 4500 4264 3723 3298 4111 3341 4538 6312 4937 3308 3487 4009 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.07 -0.03 -0.08 -0.04 -0.01 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ -0.00 0.02 0.02 -0.01 0.03 0.10 -0.03 0.10 0.15 0.08 0.12 0.17 0.01 -0.03 0.05 0.07 -0.04 -0.03 0.05 0.03 -0.01 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.02 0.05 -0.03 0.10 -0.03 -0.03 -0.00 -0.06 -0.02 -0.02 0.04 0.11 -0.03 0.17 0.11 -0.02 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.01 -0.02 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.05 -0.05 0.04 -0.05 0.09 -0.02 -0.02 0.04 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 593

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 427

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 378

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 277

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 151

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages