Detailed information of deep learning profile BP000396.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus squamous epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000396.1
Cell line/tissue: esophagus squamous epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR838RUX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4009 3487 3308 4937 6312 4538 3341 4111 3298 3723 4264 4500 4622 4563 3869 2578 3907 4985 1666 519 11641 1111 2797 14776 220 6285 1458 473 934 3169 6761 2161 2919 6028 3353 5185 3997 4388 4224 3922 4655 5516 3906 4443 4782 4994 4679 4664 4526 4575 ]
C [ 4309 3165 4600 5734 3854 3576 2961 4300 7615 6472 5575 5043 4693 4314 4872 6145 3991 1988 14036 17150 935 10043 6996 470 92 217 992 460 1361 11549 1555 8182 5537 4242 3860 3554 3397 4876 5535 6400 5442 3775 4824 4315 4090 4211 4236 4320 4543 4538 ]
G [ 4405 6197 6049 3228 4201 4257 3838 4070 2777 3107 3860 4178 4007 3594 4316 2610 5720 7777 1146 158 2723 6263 1373 1697 17516 11218 9817 16466 13998 1299 8303 5411 2454 5260 4736 4079 7116 4842 4441 3099 3282 4787 4779 4833 4662 4144 4279 4864 4818 4640 ]
T [ 5243 5117 4009 4067 3599 5595 7826 5485 4276 4664 4267 4245 4644 5495 4909 6633 4348 3216 1118 139 2667 549 6800 1023 138 246 5699 567 1673 1949 1347 2212 7056 2436 6017 5148 3456 3860 3766 4545 4587 3888 4457 4375 4432 4617 4772 4118 4079 4213 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.04 -0.02 -0.02 0.09 -0.05 0.04 -0.05 -0.05 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.02 0.01 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.03 -0.02 0.11 0.17 -0.03 0.11 0.04 -0.02 -0.02 -0.06 -0.00 -0.03 -0.03 0.10 -0.03 0.05 0.02 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.03 0.05 -0.03 -0.04 0.07 0.05 -0.03 0.01 0.17 0.12 0.08 0.15 0.10 -0.03 0.10 0.03 -0.01 0.02 0.02 -0.00 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.04 -0.08 -0.03 -0.07 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 593

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 465

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 427

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 378

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 277

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 151

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages