Detailed information of deep learning profile BP000394.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000394.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR834XPX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.09 0.14 0.05 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.14 0.07 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 4875 4660 4744 5191 5213 4847 4935 5002 4483 5223 5142 4198 4381 3846 6093 6989 2829 8237 2760 1598 2025 1810 511 5928 361 249 1852 7134 922 3802 354 1519 3849 4999 6941 5162 6046 5205 4923 4782 5215 5030 5940 7720 6065 4469 4792 4650 5582 5681 ]
C [ 5741 5976 5838 5515 5316 5961 5976 6043 5851 4387 4168 5798 6016 8704 5013 5927 6463 2844 6274 10363 1440 16976 20045 12081 13745 20583 2618 2398 7955 4126 526 2181 9061 6704 3757 5595 4754 5364 5499 5074 4440 4041 5448 5236 5446 5359 4643 6857 7044 5583 ]
G [ 5537 5573 5512 5317 5189 5182 5320 5792 5009 6588 7561 6767 5739 4464 4530 4815 5335 6958 10197 1996 13935 1738 304 1247 358 155 861 8345 10619 1762 19136 15279 3016 5000 7443 6020 5378 5833 5883 6601 7396 8268 5428 4328 4836 4926 6663 5723 4514 5363 ]
T [ 5293 5237 5352 5423 5728 5456 5215 4609 6103 5248 4575 4683 5310 4432 5810 3715 6819 3407 2215 7489 4046 922 586 2190 6982 459 16115 3569 1950 11756 1430 2467 5520 4743 3305 4669 5268 5044 5141 4989 4395 4107 4630 4162 5099 6692 5348 4216 4306 4819 ]

Hypothetical CWM

A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.06 -0.04 -0.02 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.00 ]
C [ 0.02 0.03 0.00 0.02 0.02 -0.00 0.04 0.11 -0.02 0.11 0.15 0.09 0.11 0.15 0.03 -0.01 0.04 0.06 -0.03 -0.03 0.05 0.03 0.00 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.01 0.11 -0.03 -0.04 -0.00 -0.05 -0.02 -0.01 0.05 0.10 -0.01 0.16 0.10 -0.01 0.03 0.05 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.00 0.01 -0.01 -0.02 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages