Detailed information of deep learning profile BP000394.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000394.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR834XPX
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.07 0.14 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4819 4306 4216 5348 6692 5099 4162 4630 4107 4395 4989 5141 5044 5268 4669 3305 4743 5520 2467 1430 11756 1950 3569 16115 459 6982 2190 586 922 4046 7489 2215 3407 6819 3715 5810 4432 5310 4683 4575 5248 6103 4609 5215 5456 5728 5423 5352 5237 5293 ]
C [ 5363 4514 5723 6663 4926 4836 4328 5428 8268 7396 6601 5883 5833 5378 6020 7443 5000 3016 15279 19136 1762 10619 8345 861 155 358 1247 304 1738 13935 1996 10197 6958 5335 4815 4530 4464 5739 6767 7561 6588 5009 5792 5320 5182 5189 5317 5512 5573 5537 ]
G [ 5583 7044 6857 4643 5359 5446 5236 5448 4041 4440 5074 5499 5364 4754 5595 3757 6704 9061 2181 526 4126 7955 2398 2618 20583 13745 12081 20045 16976 1440 10363 6274 2844 6463 5927 5013 8704 6016 5798 4168 4387 5851 6043 5976 5961 5316 5515 5838 5976 5741 ]
T [ 5681 5582 4650 4792 4469 6065 7720 5940 5030 5215 4782 4923 5205 6046 5162 6941 4999 3849 1519 354 3802 922 7134 1852 249 361 5928 511 1810 2025 1598 2760 8237 2829 6989 6093 3846 4381 4198 5142 5223 4483 5002 4935 4847 5213 5191 4744 4660 4875 ]

Hypothetical CWM

   
A [ 0.00 -0.02 -0.01 0.01 -0.00 -0.02 0.03 -0.02 -0.01 0.08 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.05 0.03 -0.01 0.10 0.16 -0.01 0.10 0.05 -0.01 -0.02 -0.05 -0.00 -0.04 -0.03 0.11 -0.01 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.00 0.03 0.05 -0.03 -0.03 0.06 0.04 -0.01 0.03 0.15 0.11 0.09 0.15 0.11 -0.02 0.11 0.04 -0.00 0.02 0.02 0.00 0.03 0.02 ]
T [ 0.00 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.02 -0.04 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages