Detailed information of deep learning profile BP000393.1

  1. Home
  2. Deep Learning Profile > BP000393.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000393.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR833FWC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.18 -0.00 0.07 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4274 3812 3600 5480 6828 4849 3540 4434 3538 4081 4614 4864 4944 4985 4282 2755 4280 5491 1707 428 12763 1167 2959 15784 233 6674 1583 606 1140 3455 7308 2488 3112 6492 3821 5504 4270 4960 4458 4263 4967 5981 4176 4903 5187 5377 5120 5055 4907 4992 ]
C [ 4277 3202 4866 5788 3836 3597 2964 4510 8046 6631 5816 5255 4873 4322 5129 6407 4013 2007 15102 18305 835 10858 7479 395 103 184 935 555 1573 11901 1950 8438 5804 4340 3759 3620 3499 4936 5952 6663 5656 3920 5005 4338 4238 4272 4399 4445 4663 4732 ]
G [ 4618 6622 6251 3304 4496 4311 3979 4164 2780 3172 4133 4332 4059 3682 4448 2620 6152 8014 1079 133 2619 6465 1250 1749 18514 11834 10271 17160 14395 1476 8157 5567 2545 5410 4986 4282 7403 4949 4594 3166 3382 4866 4947 5023 4819 4310 4349 5005 5005 4776 ]
T [ 5822 5355 4274 4419 3831 6234 8508 5883 4627 5107 4428 4540 5115 6002 5132 7209 4546 3479 1103 125 2774 501 7303 1063 141 299 6202 670 1883 2159 1576 2498 7530 2749 6425 5585 3819 4146 3987 4899 4986 4224 4863 4727 4747 5032 5123 4486 4416 4491 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.04 0.03 -0.03 -0.02 0.09 -0.06 0.04 -0.06 -0.05 -0.04 -0.01 0.02 -0.02 -0.01 0.02 -0.02 0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.12 0.18 -0.03 0.12 0.05 -0.01 -0.02 -0.06 0.00 -0.03 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.00 ]
G [ 0.00 0.01 0.01 0.01 -0.01 0.04 0.05 -0.02 -0.03 0.08 0.05 -0.02 0.03 0.17 0.12 0.09 0.15 0.10 -0.02 0.10 0.03 -0.01 0.02 0.02 0.00 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.07 0.05 -0.04 -0.04 -0.07 0.01 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1088

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 85

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages