Detailed information of deep learning profile BP000393.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000393.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR833FWC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.18 0.10 -0.00 0.01 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4491 4416 4486 5123 5032 4747 4727 4863 4224 4986 4899 3987 4146 3819 5585 6425 2749 7530 2498 1576 2159 1883 670 6202 299 141 1063 7303 501 2774 125 1103 3479 4546 7209 5132 6002 5115 4540 4428 5107 4627 5883 8508 6234 3831 4419 4274 5355 5822 ]
C [ 4776 5005 5005 4349 4310 4819 5023 4947 4866 3382 3166 4594 4949 7403 4282 4986 5410 2545 5567 8157 1476 14395 17160 10271 11834 18514 1749 1250 6465 2619 133 1079 8014 6152 2620 4448 3682 4059 4332 4133 3172 2780 4164 3979 4311 4496 3304 6251 6622 4618 ]
G [ 4732 4663 4445 4399 4272 4238 4338 5005 3920 5656 6663 5952 4936 3499 3620 3759 4340 5804 8438 1950 11901 1573 555 935 184 103 395 7479 10858 835 18305 15102 2007 4013 6407 5129 4322 4873 5255 5816 6631 8046 4510 2964 3597 3836 5788 4866 3202 4277 ]
T [ 4992 4907 5055 5120 5377 5187 4903 4176 5981 4967 4263 4458 4960 4270 5504 3821 6492 3112 2488 7308 3455 1140 606 1583 6674 233 15784 2959 1167 12763 428 1707 5491 4280 2755 4282 4985 4944 4864 4614 4081 3538 4434 3540 4849 6828 5480 3600 3812 4274 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.01 -0.07 -0.04 -0.04 0.05 -0.07 -0.03 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.00 0.02 0.02 -0.01 0.03 0.10 -0.02 0.10 0.15 0.09 0.12 0.17 0.03 -0.02 0.05 0.08 -0.03 -0.02 0.05 0.04 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.03 0.00 -0.06 -0.02 -0.01 0.05 0.12 -0.03 0.18 0.12 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.01 -0.02 0.02 -0.01 -0.02 0.02 -0.01 -0.04 -0.05 -0.06 0.04 -0.06 0.09 -0.02 -0.03 0.03 -0.04 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1088

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 85

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages