Detailed information of deep learning profile BP000392.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000392.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR832TWW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.18 0.13 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3835 5205 6459 4799 3761 4403 3851 4191 4791 4762 4876 5044 4401 3029 4410 5185 2211 1009 11989 1644 3285 15236 334 7394 1331 360 543 3094 7739 1868 2860 6794 3406 5562 4308 4972 4381 4365 5112 6024 4188 4964 5109 5527 5111 5016 5039 4988 5052 4788 ]
C [ 4889 5697 4061 3945 3495 4761 7163 6477 5686 5310 5073 4538 5007 6240 4206 2512 13925 17648 1256 9975 6952 533 80 163 752 89 926 13717 1120 9722 6293 4615 4043 3682 3536 5027 6148 6972 5926 4083 5213 4512 4459 4378 4512 4632 4854 4812 4800 4946 ]
G [ 6105 3810 4638 4569 4370 4463 3347 3657 4370 4670 4485 4098 4799 3157 6055 8051 1584 360 3134 6914 1699 1988 18761 11557 10831 18640 16300 817 9274 5531 2047 5552 4869 4197 7898 5157 4891 3126 3356 5114 5178 5232 5113 4375 4465 5183 5126 5102 4913 5077 ]
T [ 4515 4632 4186 6031 7718 5717 4983 5019 4497 4602 4910 5664 5137 6918 4673 3596 1624 327 2965 811 7408 1587 169 230 6430 255 1575 1716 1211 2223 8144 2383 7026 5903 3602 4188 3924 4881 4950 4123 4765 4636 4663 5064 5256 4513 4325 4442 4579 4533 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.03 -0.02 0.02 -0.01 -0.02 0.04 -0.02 -0.01 0.09 -0.04 0.05 -0.07 -0.05 -0.06 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.13 0.19 -0.01 0.13 0.06 0.01 -0.01 -0.05 0.02 -0.03 -0.02 0.15 -0.02 0.08 0.06 0.04 0.02 0.01 0.01 0.03 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.19 0.14 0.12 0.19 0.15 -0.02 0.16 0.06 -0.00 0.04 0.03 0.01 0.05 0.02 0.02 ]
T [ 0.00 -0.00 0.01 0.01 0.02 -0.01 -0.02 -0.03 -0.08 -0.03 -0.06 0.06 -0.03 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2519

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 978

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 22

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages