Detailed information of deep learning profile BP000392.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000392.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR832TWW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.06 -0.00 0.13 0.18 0.06 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4533 4579 4442 4325 4513 5256 5064 4663 4636 4765 4123 4950 4881 3924 4188 3602 5903 7026 2383 8144 2223 1211 1716 1575 255 6430 230 169 1587 7408 811 2965 327 1624 3596 4673 6918 5137 5664 4910 4602 4497 5019 4983 5717 7718 6031 4186 4632 4515 ]
C [ 5077 4913 5102 5126 5183 4465 4375 5113 5232 5178 5114 3356 3126 4891 5157 7898 4197 4869 5552 2047 5531 9274 817 16300 18640 10831 11557 18761 1988 1699 6914 3134 360 1584 8051 6055 3157 4799 4098 4485 4670 4370 3657 3347 4463 4370 4569 4638 3810 6105 ]
G [ 4946 4800 4812 4854 4632 4512 4378 4459 4512 5213 4083 5926 6972 6148 5027 3536 3682 4043 4615 6293 9722 1120 13717 926 89 752 163 80 533 6952 9975 1256 17648 13925 2512 4206 6240 5007 4538 5073 5310 5686 6477 7163 4761 3495 3945 4061 5697 4889 ]
T [ 4788 5052 4988 5039 5016 5111 5527 5109 4964 4188 6024 5112 4365 4381 4972 4308 5562 3406 6794 2860 1868 7739 3094 543 360 1331 7394 334 15236 3285 1644 11989 1009 2211 5185 4410 3029 4401 5044 4876 4762 4791 4191 3851 4403 3761 4799 6459 5205 3835 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.03 0.06 -0.06 -0.03 -0.08 -0.03 -0.02 -0.01 0.02 0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.05 0.01 0.03 0.04 -0.00 0.06 0.16 -0.02 0.15 0.19 0.12 0.14 0.19 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.03 0.01 0.01 0.02 0.04 0.06 0.08 -0.02 0.15 -0.02 -0.03 0.02 -0.05 -0.01 0.01 0.06 0.13 -0.01 0.19 0.13 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.06 -0.05 -0.07 0.05 -0.04 0.09 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.02 -0.03 0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2519

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 978

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 666

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 133

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 22

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages