Detailed information of deep learning profile BP000390.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000390.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR825NXC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.16 0.06 0.05 0.16 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4065 3588 3435 4983 6409 4505 3490 4201 3469 3878 4429 4523 4705 4741 4188 2706 4098 5031 1885 493 11951 1340 2995 15044 282 7073 1126 284 477 2748 7243 1770 2567 6525 3224 5365 3903 4656 4115 3840 4710 5859 3814 4692 4889 5256 4823 4709 4727 4678 ]
C [ 4194 3250 4641 5585 3767 3597 3011 4361 7140 6236 5563 5163 4677 4184 4680 5847 3851 2035 13641 17312 1092 9659 6851 495 77 145 660 135 704 13063 977 9466 5942 4367 3731 3411 3308 4863 5881 6923 5772 3743 5020 4228 4116 4107 4200 4298 4648 4598 ]
G [ 4568 6238 5994 3407 4318 4372 3988 4201 3019 3325 4062 4204 4152 3808 4459 2919 5853 7759 1376 251 2528 6586 1511 1602 17762 10841 10265 17561 15530 690 9020 5130 1742 5263 4777 3934 7654 4878 4610 2795 3040 4823 4887 4903 4718 4064 4284 5006 4810 4824 ]
T [ 5425 5176 4182 4277 3758 5778 7763 5489 4624 4813 4198 4362 4718 5519 4925 6780 4450 3427 1350 196 2681 667 6895 1111 131 193 6201 272 1541 1751 1012 1886 8001 2097 6520 5542 3387 3855 3646 4694 4730 3827 4531 4429 4529 4825 4945 4239 4067 4152 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.02 0.01 -0.01 -0.03 0.04 -0.03 -0.01 0.09 -0.05 0.05 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.02 0.11 0.05 -0.01 -0.02 -0.06 -0.01 -0.04 -0.04 0.12 -0.02 0.06 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.05 -0.03 -0.03 0.07 0.04 -0.02 0.02 0.16 0.12 0.09 0.16 0.12 -0.02 0.13 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.04 -0.07 -0.03 -0.05 0.05 -0.03 -0.04 -0.07 0.03 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 644

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 178

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages