Detailed information of deep learning profile BP000390.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000390.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR825NXC
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.11 0.16 0.05 0.06 0.16 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4152 4067 4239 4945 4825 4529 4429 4531 3827 4730 4694 3646 3855 3387 5542 6520 2097 8001 1886 1012 1751 1541 272 6201 193 131 1111 6895 667 2681 196 1350 3427 4450 6780 4925 5519 4718 4362 4198 4813 4624 5489 7763 5778 3758 4277 4182 5176 5425 ]
C [ 4824 4810 5006 4284 4064 4718 4903 4887 4823 3040 2795 4610 4878 7654 3934 4777 5263 1742 5130 9020 690 15530 17561 10265 10841 17762 1602 1511 6586 2528 251 1376 7759 5853 2919 4459 3808 4152 4204 4062 3325 3019 4201 3988 4372 4318 3407 5994 6238 4568 ]
G [ 4598 4648 4298 4200 4107 4116 4228 5020 3743 5772 6923 5881 4863 3308 3411 3731 4367 5942 9466 977 13063 704 135 660 145 77 495 6851 9659 1092 17312 13641 2035 3851 5847 4680 4184 4677 5163 5563 6236 7140 4361 3011 3597 3767 5585 4641 3250 4194 ]
T [ 4678 4727 4709 4823 5256 4889 4692 3814 5859 4710 3840 4115 4656 3903 5365 3224 6525 2567 1770 7243 2748 477 284 1126 7073 282 15044 2995 1340 11951 493 1885 5031 4098 2706 4188 4741 4705 4523 4429 3878 3469 4201 3490 4505 6409 4983 3435 3588 4065 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.03 -0.07 -0.04 -0.03 0.05 -0.05 -0.03 -0.07 -0.04 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.13 -0.02 0.12 0.16 0.09 0.12 0.16 0.02 -0.02 0.04 0.07 -0.03 -0.03 0.05 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.06 -0.02 0.12 -0.04 -0.04 -0.01 -0.06 -0.02 -0.01 0.05 0.11 -0.02 0.17 0.11 -0.01 0.04 0.05 0.02 0.01 0.02 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.05 -0.05 0.09 -0.01 -0.03 0.04 -0.03 -0.01 0.01 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 644

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 178

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages