Detailed information of deep learning profile BP000389.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000389.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR822PJT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.04 -0.00 0.10 0.15 0.04 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4892 4821 5025 6030 5820 5364 5315 5394 4500 5696 5557 4344 4549 4072 6346 7526 2457 8656 2347 1337 2009 1892 422 7314 252 187 1303 8138 681 2707 159 1418 3941 5111 8368 5889 6743 5565 5177 5018 5836 5365 6582 9484 6952 4408 5044 4902 6247 6255 ]
C [ 5613 5624 5889 4766 4722 5297 5716 5658 5727 3393 3213 4950 5785 8718 4665 5618 6144 2584 6679 9928 1224 17479 20120 11644 12499 20779 1964 1697 7130 3319 166 1369 9207 7188 3108 5177 4154 4720 4856 4569 3587 3198 4719 4516 5018 4929 3853 7222 7253 5345 ]
G [ 5320 5317 5037 4885 4589 4884 4983 5831 4188 6744 8163 6958 5812 3820 4024 4347 5094 6998 10086 1557 14748 1334 424 1191 297 137 714 8057 12381 971 20648 16610 2270 4480 6926 5384 4769 5452 5869 6674 7494 8941 5176 3472 4120 4349 6634 5366 3722 5069 ]
T [ 5629 5692 5503 5773 6323 5909 5440 4571 7039 5621 4521 5202 5308 4844 6419 3963 7759 3216 2342 8632 3473 749 488 1305 8406 351 17473 3562 1262 14457 481 2057 6036 4675 3052 5004 5788 5717 5552 5193 4537 3950 4977 3982 5364 7768 5923 3964 4232 4785 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.03 0.01 -0.04 0.02 -0.07 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.03 0.00 0.02 0.02 -0.00 0.05 0.11 -0.01 0.11 0.15 0.09 0.12 0.16 0.03 0.00 0.05 0.08 -0.01 -0.02 0.06 0.04 -0.00 0.01 0.00 0.01 0.00 ]
G [ 0.02 0.00 0.01 0.01 0.02 0.04 0.05 -0.01 0.11 -0.02 -0.02 0.02 -0.04 -0.01 0.01 0.05 0.11 -0.02 0.17 0.11 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.05 -0.04 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 208

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages