Detailed information of deep learning profile BP000389.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000389.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR822PJT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.04 0.15 0.10 -0.00 0.04 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4785 4232 3964 5923 7768 5364 3982 4977 3950 4537 5193 5552 5717 5788 5004 3052 4675 6036 2057 481 14457 1262 3562 17473 351 8406 1305 488 749 3473 8632 2342 3216 7759 3963 6419 4844 5308 5202 4521 5621 7039 4571 5440 5909 6323 5773 5503 5692 5629 ]
C [ 5069 3722 5366 6634 4349 4120 3472 5176 8941 7494 6674 5869 5452 4769 5384 6926 4480 2270 16610 20648 971 12381 8057 714 137 297 1191 424 1334 14748 1557 10086 6998 5094 4347 4024 3820 5812 6958 8163 6744 4188 5831 4983 4884 4589 4885 5037 5317 5320 ]
G [ 5345 7253 7222 3853 4929 5018 4516 4719 3198 3587 4569 4856 4720 4154 5177 3108 7188 9207 1369 166 3319 7130 1697 1964 20779 12499 11644 20120 17479 1224 9928 6679 2584 6144 5618 4665 8718 5785 4950 3213 3393 5727 5658 5716 5297 4722 4766 5889 5624 5613 ]
T [ 6255 6247 4902 5044 4408 6952 9484 6582 5365 5836 5018 5177 5565 6743 5889 8368 5111 3941 1418 159 2707 681 8138 1303 187 252 7314 422 1892 2009 1337 2347 8656 2457 7526 6346 4072 4549 4344 5557 5696 4500 5394 5315 5364 5820 6030 5025 4821 4892 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.05 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.11 0.17 -0.02 0.11 0.05 0.01 -0.01 -0.04 0.02 -0.02 -0.02 0.11 -0.01 0.05 0.04 0.02 0.01 0.01 0.00 0.02 ]
G [ 0.00 0.01 0.00 0.01 -0.00 0.04 0.06 -0.02 -0.01 0.08 0.05 0.00 0.03 0.16 0.12 0.09 0.15 0.11 -0.01 0.11 0.05 -0.00 0.02 0.02 0.00 0.03 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.07 0.02 -0.04 0.01 -0.03 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 208

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages