Detailed information of deep learning profile BP000388.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000388.1
Cell line/tissue: neural cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR822CEA
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.04 0.05 0.12 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.13 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4437 4099 4390 4825 4699 4477 4457 4528 4078 4741 4573 3863 3981 3687 5488 6549 2503 7773 2318 1295 1799 1656 408 5918 317 265 1625 6851 844 3291 321 1502 3539 4632 6423 4948 5479 4671 4529 4445 4861 4441 5618 7666 5602 4010 4379 4168 5386 5289 ]
C [ 5048 5152 5191 4703 4687 5116 5316 5347 5163 3683 3500 5092 5139 7633 4493 5083 5824 2335 5276 9539 1191 15167 17962 10418 12159 18161 2449 2065 6751 3313 476 1969 7962 5702 3190 4983 4159 4498 4599 4343 3620 3382 4450 4260 4730 4551 3779 6398 6268 4857 ]
G [ 4878 5008 4821 4773 4722 4610 4633 5142 4327 5827 6888 5981 5246 3789 3974 4132 4673 6047 9530 1572 12937 1540 251 1068 378 213 863 7090 9931 1615 17365 13563 2504 4578 6602 5087 4717 5329 5517 5912 6675 7714 4795 3621 3976 4201 6044 4976 3791 4786 ]
T [ 4785 4889 4746 4847 5040 4945 4742 4131 5580 4897 4187 4212 4782 4039 5193 3384 6148 2993 2024 6742 3221 785 527 1744 6294 509 14211 3142 1622 10929 986 2114 5143 4236 2933 4130 4793 4650 4503 4448 3992 3611 4285 3601 4840 6386 4946 3606 3703 4216 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.05 -0.03 -0.02 0.04 -0.04 -0.02 -0.05 -0.02 -0.01 0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.10 0.13 0.07 0.09 0.13 0.02 -0.01 0.04 0.05 -0.02 -0.01 0.04 0.02 -0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.01 0.10 -0.02 -0.03 -0.01 -0.05 -0.03 -0.01 0.04 0.08 -0.02 0.13 0.08 -0.01 0.03 0.03 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.03 -0.04 0.04 -0.03 0.07 -0.01 -0.02 0.03 -0.02 -0.00 0.02 -0.01 -0.01 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages