Detailed information of deep learning profile BP000388.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neural cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000388.1
Cell line/tissue: neural cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR822CEA
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.13 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.12 0.05 0.04 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4216 3703 3606 4946 6386 4840 3601 4285 3611 3992 4448 4503 4650 4793 4130 2933 4236 5143 2114 986 10929 1622 3142 14211 509 6294 1744 527 785 3221 6742 2024 2993 6148 3384 5193 4039 4782 4212 4187 4897 5580 4131 4742 4945 5040 4847 4746 4889 4785 ]
C [ 4786 3791 4976 6044 4201 3976 3621 4795 7714 6675 5912 5517 5329 4717 5087 6602 4578 2504 13563 17365 1615 9931 7090 863 213 378 1068 251 1540 12937 1572 9530 6047 4673 4132 3974 3789 5246 5981 6888 5827 4327 5142 4633 4610 4722 4773 4821 5008 4878 ]
G [ 4857 6268 6398 3779 4551 4730 4260 4450 3382 3620 4343 4599 4498 4159 4983 3190 5702 7962 1969 476 3313 6751 2065 2449 18161 12159 10418 17962 15167 1191 9539 5276 2335 5824 5083 4493 7633 5139 5092 3500 3683 5163 5347 5316 5116 4687 4703 5191 5152 5048 ]
T [ 5289 5386 4168 4379 4010 5602 7666 5618 4441 4861 4445 4529 4671 5479 4948 6423 4632 3539 1502 321 3291 844 6851 1625 265 317 5918 408 1656 1799 1295 2318 7773 2503 6549 5488 3687 3981 3863 4573 4741 4078 4528 4457 4477 4699 4825 4390 4099 4437 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 -0.01 0.02 -0.00 -0.02 0.03 -0.02 -0.01 0.07 -0.03 0.04 -0.04 -0.03 -0.04 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.03 0.03 -0.01 0.08 0.13 -0.02 0.08 0.04 -0.01 -0.03 -0.05 -0.01 -0.03 -0.02 0.10 -0.01 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.02 0.04 -0.01 -0.02 0.05 0.04 -0.01 0.02 0.13 0.09 0.07 0.13 0.10 -0.02 0.09 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.05 -0.02 -0.04 0.04 -0.02 -0.03 -0.05 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages