Detailed information of deep learning profile BP000387.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000387.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR819WDZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.19 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4790 4677 4864 5523 5313 5001 4847 5086 4412 5217 5286 4215 4492 3889 6127 7092 2813 8325 2560 1442 2007 1851 422 6417 307 205 1512 8013 754 3173 233 1530 3801 4833 7396 5425 6078 5273 4926 4749 5301 5053 6016 8106 6448 4386 4848 4773 5694 5829 ]
C [ 5327 5389 5422 4786 4796 5298 5545 5441 5380 3719 3426 5257 5529 8107 4602 5277 5949 2507 5924 9503 1193 16293 19382 11576 12696 19893 2204 1771 7281 3132 294 1574 8628 6465 3295 5132 4231 4748 4890 4624 3943 3498 4741 4703 4868 4784 3998 6471 6780 5159 ]
G [ 5133 5182 4916 4781 4739 4781 4865 5546 4460 6243 7181 6427 5331 3959 4034 4416 4783 6444 9779 1692 13765 1468 267 900 221 92 596 7379 10912 1266 19203 15320 2505 4632 6762 5379 4898 5321 5607 6187 6935 7956 5053 3680 4166 4441 6109 5232 3849 4901 ]
T [ 5254 5256 5302 5414 5656 5424 5247 4431 6252 5325 4611 4605 5152 4549 5741 3719 6959 3228 2241 7867 3539 892 433 1611 7280 314 16192 3341 1557 12933 774 2080 5570 4574 3051 4568 5297 5162 5081 4944 4325 3997 4694 4015 5022 6893 5549 4028 4181 4615 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.07 -0.03 0.00 -0.05 0.03 -0.07 -0.04 -0.04 0.07 -0.07 -0.04 -0.09 -0.04 -0.02 -0.01 0.02 0.00 0.01 -0.00 0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.00 0.05 0.14 -0.02 0.14 0.19 0.11 0.14 0.20 0.03 -0.02 0.06 0.09 -0.03 -0.03 0.06 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.05 0.07 -0.01 0.14 -0.03 -0.04 0.01 -0.07 -0.02 -0.00 0.06 0.14 -0.02 0.20 0.14 -0.02 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.02 -0.06 -0.06 -0.08 0.05 -0.06 0.10 -0.03 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 0.00 0.01 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 812

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 747

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 502

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages