Detailed information of deep learning profile BP000387.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000387.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR819WDZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.08 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4615 4181 4028 5549 6893 5022 4015 4694 3997 4325 4944 5081 5162 5297 4568 3051 4574 5570 2080 774 12933 1557 3341 16192 314 7280 1611 433 892 3539 7867 2241 3228 6959 3719 5741 4549 5152 4605 4611 5325 6252 4431 5247 5424 5656 5414 5302 5256 5254 ]
C [ 4901 3849 5232 6109 4441 4166 3680 5053 7956 6935 6187 5607 5321 4898 5379 6762 4632 2505 15320 19203 1266 10912 7379 596 92 221 900 267 1468 13765 1692 9779 6444 4783 4416 4034 3959 5331 6427 7181 6243 4460 5546 4865 4781 4739 4781 4916 5182 5133 ]
G [ 5159 6780 6471 3998 4784 4868 4703 4741 3498 3943 4624 4890 4748 4231 5132 3295 6465 8628 1574 294 3132 7281 1771 2204 19893 12696 11576 19382 16293 1193 9503 5924 2507 5949 5277 4602 8107 5529 5257 3426 3719 5380 5441 5545 5298 4796 4786 5422 5389 5327 ]
T [ 5829 5694 4773 4848 4386 6448 8106 6016 5053 5301 4749 4926 5273 6078 5425 7396 4833 3801 1530 233 3173 754 8013 1512 205 307 6417 422 1851 2007 1442 2560 8325 2813 7092 6127 3889 4492 4215 5286 5217 4412 5086 4847 5001 5313 5523 4864 4677 4790 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.03 0.10 -0.06 0.05 -0.08 -0.06 -0.06 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.02 0.14 0.20 -0.02 0.14 0.06 -0.00 -0.02 -0.07 0.01 -0.04 -0.03 0.14 -0.01 0.07 0.05 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.06 -0.03 -0.03 0.09 0.06 -0.02 0.03 0.20 0.14 0.11 0.19 0.14 -0.02 0.14 0.05 -0.00 0.03 0.02 0.01 0.04 0.02 ]
T [ 0.00 -0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.09 -0.04 -0.07 0.07 -0.04 -0.04 -0.07 0.03 -0.05 0.00 -0.03 -0.07 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 812

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 747

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 502

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 100

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages