Detailed information of deep learning profile BP000385.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000385.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR813KUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.07 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.19 0.13 -0.00 0.06 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4046 5356 6639 4938 3970 4570 4120 4352 4949 4924 5129 5277 4612 3083 4597 5386 2240 959 12546 1568 3482 16070 372 8022 1243 365 473 3112 8133 1830 2882 7140 3483 5851 4461 5135 4525 4473 5248 6232 4281 5081 5343 5749 5341 5150 5310 5175 5173 4949 ]
C [ 5196 6101 4437 4276 3745 5084 7529 6744 6086 5609 5313 4884 5237 6570 4474 2518 14745 18748 1225 10758 7302 733 93 236 899 105 859 14854 1075 10249 6811 4963 4332 3941 3665 5301 6567 7639 6353 4246 5471 4802 4685 4661 4756 4916 5189 5198 5118 5202 ]
G [ 6347 4103 4864 4908 4710 4761 3607 4018 4640 4933 4840 4362 5154 3443 6446 8719 1720 355 3645 7194 1820 2020 19672 11859 11399 19622 17391 696 9988 5990 2220 5861 5242 4433 8430 5634 5186 3194 3475 5530 5611 5621 5370 4689 4721 5591 5437 5365 5191 5438 ]
T [ 4755 4784 4404 6222 7919 5929 5088 5230 4669 4878 5062 5821 5341 7248 4827 3721 1639 282 2928 824 7740 1521 207 227 6803 252 1621 1682 1148 2275 8431 2380 7287 6119 3788 4274 4066 5038 5268 4336 4981 4840 4946 5245 5526 4687 4408 4606 4862 4755 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.10 -0.04 0.07 -0.07 -0.04 -0.06 -0.01 0.03 -0.02 -0.02 0.04 -0.02 0.02 -0.00 0.01 ]
C [ 0.03 0.01 0.01 0.03 0.06 0.05 -0.01 0.12 0.19 -0.00 0.13 0.06 0.01 -0.02 -0.06 0.01 -0.04 -0.02 0.16 -0.01 0.08 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.01 0.05 0.07 -0.02 -0.02 0.08 0.06 -0.01 0.03 0.19 0.15 0.12 0.19 0.15 -0.03 0.15 0.05 0.00 0.03 0.03 0.00 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.02 -0.05 0.07 -0.03 -0.03 -0.08 0.04 -0.04 0.02 -0.03 -0.07 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages