Detailed information of deep learning profile BP000384.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000384.1
Cell line/tissue: foreskin keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR812FNU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.12 0.04 0.06 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4949 4754 4840 5202 5138 4911 4959 5103 4689 5169 5064 4357 4540 4219 5958 6864 3038 8056 2955 1676 2439 1916 769 6174 469 313 1817 7212 910 4147 446 1556 4059 5062 6888 5277 6206 5509 4880 4800 5204 4937 6095 8071 6182 4296 4931 4629 5834 5815 ]
C [ 5313 5549 5471 5153 5077 5387 5566 5526 5417 4263 4126 5540 5609 7767 4728 5403 6100 2860 5763 9717 1537 15879 18940 10722 13804 19915 2531 2188 7712 3228 445 1856 8273 6089 3424 5042 4365 4835 4918 4638 4014 3645 4826 4676 4885 4853 4060 6855 6634 5142 ]
G [ 5227 5208 5130 5103 5077 4958 4974 5347 4675 6019 6763 6117 5234 4297 4357 4550 4967 6253 9520 2134 12512 1742 407 1013 234 159 604 7882 10012 1666 18456 14907 2795 4796 7099 5840 4955 5409 5632 6297 7031 8105 5076 3844 4375 4620 6366 5263 3941 4933 ]
T [ 5275 5253 5323 5306 5472 5508 5265 4788 5983 5313 4811 4750 5381 4481 5721 3947 6659 3595 2526 7237 4276 1227 648 2855 6257 377 15812 3482 2130 11723 1417 2445 5637 4817 3353 4605 5238 5011 5334 5029 4515 4077 4767 4173 5322 6995 5407 4017 4355 4874 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.02 -0.05 -0.03 -0.02 0.04 -0.04 -0.02 -0.05 -0.03 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.03 0.10 -0.01 0.09 0.12 0.07 0.10 0.13 0.02 -0.01 0.04 0.05 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.00 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.03 0.05 -0.01 0.09 -0.02 -0.03 -0.00 -0.05 -0.02 -0.01 0.04 0.08 -0.01 0.13 0.08 -0.01 0.03 0.04 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.03 -0.04 -0.03 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 35

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages