Detailed information of deep learning profile BP000384.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in foreskin keratinocyte using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000384.1
Cell line/tissue: foreskin keratinocyte
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR812FNU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.06 0.04 0.12 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4874 4355 4017 5407 6995 5322 4173 4767 4077 4515 5029 5334 5011 5238 4605 3353 4817 5637 2445 1417 11723 2130 3482 15812 377 6257 2855 648 1227 4276 7237 2526 3595 6659 3947 5721 4481 5381 4750 4811 5313 5983 4788 5265 5508 5472 5306 5323 5253 5275 ]
C [ 4933 3941 5263 6366 4620 4375 3844 5076 8105 7031 6297 5632 5409 4955 5840 7099 4796 2795 14907 18456 1666 10012 7882 604 159 234 1013 407 1742 12512 2134 9520 6253 4967 4550 4357 4297 5234 6117 6763 6019 4675 5347 4974 4958 5077 5103 5130 5208 5227 ]
G [ 5142 6634 6855 4060 4853 4885 4676 4826 3645 4014 4638 4918 4835 4365 5042 3424 6089 8273 1856 445 3228 7712 2188 2531 19915 13804 10722 18940 15879 1537 9717 5763 2860 6100 5403 4728 7767 5609 5540 4126 4263 5417 5526 5566 5387 5077 5153 5471 5549 5313 ]
T [ 5815 5834 4629 4931 4296 6182 8071 6095 4937 5204 4800 4880 5509 6206 5277 6888 5062 4059 1556 446 4147 910 7212 1817 313 469 6174 769 1916 2439 1676 2955 8056 3038 6864 5958 4219 4540 4357 5064 5169 4689 5103 4959 4911 5138 5202 4840 4754 4949 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.03 -0.04 -0.03 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.01 0.08 0.13 -0.01 0.08 0.04 -0.01 -0.02 -0.05 -0.00 -0.03 -0.02 0.09 -0.01 0.05 0.03 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.00 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.05 0.04 -0.01 0.02 0.13 0.10 0.07 0.12 0.09 -0.01 0.10 0.03 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.03 -0.05 -0.02 -0.04 0.04 -0.02 -0.03 -0.05 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.neg_patterns.pattern_0

Num. of seqlets: 145

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 35

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages