Detailed information of deep learning profile BP000383.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in activated CD4-positive and alpha-beta T cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000383.1
Cell line/tissue: activated CD4-positive and alpha-beta T cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR806WWX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.13 0.06 0.04 0.12 0.08 0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3788 3285 3146 4500 5540 4033 3247 3972 3042 3443 3919 4055 4052 4110 3760 2538 3710 4530 1765 782 9652 1492 2606 12951 261 4894 1497 379 892 3000 5456 2086 2921 5251 3089 4449 3586 4168 3821 3781 4198 4836 3723 4087 4377 4364 4172 4158 4088 4075 ]
C [ 4107 3206 4396 5236 3782 3615 3043 4258 7006 6032 5240 4875 4664 4323 4744 5887 4063 2164 12562 15433 1431 8706 6442 541 137 190 919 406 1710 10559 2008 7893 5091 3995 3689 3619 3522 4487 5066 5608 4951 4006 4533 4079 4075 4093 4225 4254 4390 4317 ]
G [ 4301 5797 5595 3297 4061 4126 3916 3945 2896 3224 3791 4073 3872 3647 4129 2858 5215 7124 1405 391 2684 5999 1663 2022 16237 11486 9773 15557 12693 1424 7974 4491 2526 5021 4605 4019 6465 4575 4560 3381 3650 4434 4587 4630 4531 4259 4233 4669 4609 4545 ]
T [ 4672 4580 3731 3835 3485 5094 6662 4693 3924 4169 3918 3865 4280 4788 4235 5585 3880 3050 1136 262 3101 671 6157 1354 233 298 4679 526 1573 1885 1430 2398 6330 2601 5485 4781 3295 3638 3421 4098 4069 3592 4025 4072 3885 4152 4238 3787 3781 3931 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.01 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.07 -0.04 0.03 -0.04 -0.04 -0.04 -0.01 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.09 0.13 -0.02 0.08 0.04 -0.02 -0.02 -0.05 -0.01 -0.03 -0.02 0.08 -0.01 0.04 0.03 0.01 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.05 0.04 -0.03 0.02 0.13 0.10 0.07 0.12 0.09 -0.01 0.09 0.03 -0.01 0.02 0.01 0.00 0.02 0.01 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.02 -0.03 -0.06 0.01 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1087

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages