Detailed information of deep learning profile BP000383.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in activated CD4-positive and alpha-beta T cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000383.1
Cell line/tissue: activated CD4-positive and alpha-beta T cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR806WWX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 0.00 0.08 0.12 0.04 0.06 0.13 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3931 3781 3787 4238 4152 3885 4072 4025 3592 4069 4098 3421 3638 3295 4781 5485 2601 6330 2398 1430 1885 1573 526 4679 298 233 1354 6157 671 3101 262 1136 3050 3880 5585 4235 4788 4280 3865 3918 4169 3924 4693 6662 5094 3485 3835 3731 4580 4672 ]
C [ 4545 4609 4669 4233 4259 4531 4630 4587 4434 3650 3381 4560 4575 6465 4019 4605 5021 2526 4491 7974 1424 12693 15557 9773 11486 16237 2022 1663 5999 2684 391 1405 7124 5215 2858 4129 3647 3872 4073 3791 3224 2896 3945 3916 4126 4061 3297 5595 5797 4301 ]
G [ 4317 4390 4254 4225 4093 4075 4079 4533 4006 4951 5608 5066 4487 3522 3619 3689 3995 5091 7893 2008 10559 1710 406 919 190 137 541 6442 8706 1431 15433 12562 2164 4063 5887 4744 4323 4664 4875 5240 6032 7006 4258 3043 3615 3782 5236 4396 3206 4107 ]
T [ 4075 4088 4158 4172 4364 4377 4087 3723 4836 4198 3781 3821 4168 3586 4449 3089 5251 2921 2086 5456 3000 892 379 1497 4894 261 12951 2606 1492 9652 782 1765 4530 3710 2538 3760 4110 4052 4055 3919 3443 3042 3972 3247 4033 5540 4500 3146 3285 3788 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.02 0.00 -0.03 0.01 -0.06 -0.03 -0.02 0.05 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.01 0.02 0.00 0.01 0.02 -0.01 0.03 0.09 -0.01 0.09 0.12 0.07 0.10 0.13 0.02 -0.03 0.04 0.05 -0.02 -0.02 0.04 0.03 -0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.01 0.03 0.04 -0.01 0.08 -0.02 -0.03 -0.01 -0.05 -0.02 -0.02 0.04 0.08 -0.02 0.13 0.09 -0.01 0.03 0.04 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.04 -0.04 -0.04 0.03 -0.04 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.01 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1087

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages