Detailed information of deep learning profile BP000381.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000381.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR799WDT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.14 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.14 0.06 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4177 3750 3600 4963 6129 4454 3650 4248 3573 3925 4410 4587 4637 4747 4170 2936 4213 4982 1993 540 11461 1463 2907 14601 261 6802 1634 305 472 3027 7147 2025 2760 6361 3403 5181 4005 4683 4187 4033 4700 5565 3965 4587 4874 5057 4892 4719 4691 4726 ]
C [ 4217 3310 4559 5403 3862 3701 3143 4443 6806 5890 5373 4907 4670 4251 4798 5724 3808 2225 13476 17202 1087 8934 7181 468 93 147 852 83 633 12562 1158 8767 5700 4135 3726 3546 3362 4686 5565 6341 5422 3866 4781 4204 4098 4129 4175 4270 4499 4532 ]
G [ 4517 5899 5749 3484 4246 4270 4018 4148 3058 3484 4034 4195 4035 3657 4324 2791 5592 7350 1358 181 2373 6999 1641 1754 17552 10903 9166 17437 15527 720 8499 5213 2080 5217 4748 3849 7173 4783 4577 3085 3258 4698 4737 4834 4668 4179 4118 4875 4823 4617 ]
T [ 5156 5108 4159 4217 3830 5642 7256 5228 4630 4768 4250 4378 4725 5412 4775 6616 4454 3510 1240 144 3146 671 6338 1244 161 215 6415 242 1435 1758 1263 2062 7527 2354 6190 5491 3527 3915 3738 4608 4687 3938 4584 4442 4427 4702 4882 4203 4054 4192 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.02 0.07 -0.05 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.01 0.04 0.03 -0.01 0.10 0.15 -0.02 0.10 0.05 -0.01 -0.02 -0.05 0.00 -0.03 -0.02 0.10 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.00 0.03 0.04 -0.02 -0.03 0.06 0.04 -0.02 0.02 0.14 0.11 0.08 0.13 0.10 -0.02 0.09 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.02 -0.03 0.00 -0.02 -0.05 -0.02 0.02 -0.03 0.02 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 590

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages