Detailed information of deep learning profile BP000381.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000381.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR799WDT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.06 0.14 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.14 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4192 4054 4203 4882 4702 4427 4442 4584 3938 4687 4608 3738 3915 3527 5491 6190 2354 7527 2062 1263 1758 1435 242 6415 215 161 1244 6338 671 3146 144 1240 3510 4454 6616 4775 5412 4725 4378 4250 4768 4630 5228 7256 5642 3830 4217 4159 5108 5156 ]
C [ 4617 4823 4875 4118 4179 4668 4834 4737 4698 3258 3085 4577 4783 7173 3849 4748 5217 2080 5213 8499 720 15527 17437 9166 10903 17552 1754 1641 6999 2373 181 1358 7350 5592 2791 4324 3657 4035 4195 4034 3484 3058 4148 4018 4270 4246 3484 5749 5899 4517 ]
G [ 4532 4499 4270 4175 4129 4098 4204 4781 3866 5422 6341 5565 4686 3362 3546 3726 4135 5700 8767 1158 12562 633 83 852 147 93 468 7181 8934 1087 17202 13476 2225 3808 5724 4798 4251 4670 4907 5373 5890 6806 4443 3143 3701 3862 5403 4559 3310 4217 ]
T [ 4726 4691 4719 4892 5057 4874 4587 3965 5565 4700 4033 4187 4683 4005 5181 3403 6361 2760 2025 7147 3027 472 305 1634 6802 261 14601 2907 1463 11461 540 1993 4982 4213 2936 4170 4747 4637 4587 4410 3925 3573 4248 3650 4454 6129 4963 3600 3750 4177 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.00 0.02 -0.03 0.02 -0.02 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.09 -0.02 0.10 0.13 0.08 0.11 0.14 0.02 -0.02 0.04 0.06 -0.03 -0.02 0.04 0.03 -0.00 0.01 0.00 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.10 -0.02 -0.03 0.00 -0.05 -0.02 -0.01 0.05 0.10 -0.02 0.15 0.10 -0.01 0.03 0.04 0.01 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.05 0.07 -0.02 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4520

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 590

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages