Detailed information of deep learning profile BP000380.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in upper lobe of left lung using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000380.1
Cell line/tissue: upper lobe of left lung
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR799TJD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.17 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4119 3982 4132 5106 4745 4478 4357 4505 3592 4678 4566 3555 3744 3286 5387 6332 2016 7591 1793 970 1703 1549 264 6366 165 105 893 7042 515 2330 104 1155 3333 4399 7056 4940 5617 4750 4277 4052 4811 4541 5526 7952 5922 3546 4177 4066 5060 5327 ]
C [ 4680 4743 4916 3986 3929 4526 4807 4689 4683 2773 2563 4169 4717 7572 3836 4708 4999 1913 5516 8317 755 15021 17087 9957 10380 17512 1384 1335 6109 2416 91 1113 7604 6050 2646 4268 3575 3830 4079 3835 3094 2771 3908 3823 4239 4262 3255 6030 6291 4460 ]
G [ 4501 4437 4177 3964 3932 4003 4081 4872 3619 5692 6993 5922 4864 3078 3233 3592 4300 5872 8747 1074 12670 811 179 581 133 59 464 6676 10242 747 17306 13904 1865 3513 5646 4504 3900 4498 4974 5563 6197 7299 4270 2791 3277 3571 5506 4537 3090 4075 ]
T [ 4577 4715 4652 4821 5271 4870 4632 3811 5983 4734 3755 4231 4552 3941 5421 3245 6562 2501 1821 7516 2749 496 347 973 7199 201 15136 2824 1011 12384 376 1705 5075 3915 2529 4165 4785 4799 4547 4427 3775 3266 4173 3311 4439 6498 4939 3244 3436 4015 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.02 -0.07 -0.03 0.01 -0.05 0.02 -0.09 -0.04 -0.05 0.05 -0.06 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 ]
C [ 0.02 0.04 0.00 0.02 0.03 -0.00 0.05 0.13 -0.02 0.13 0.17 0.10 0.14 0.17 0.03 -0.02 0.05 0.08 -0.02 -0.03 0.05 0.04 -0.00 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.02 0.13 -0.04 -0.04 -0.01 -0.07 -0.02 -0.01 0.05 0.11 -0.04 0.18 0.11 -0.01 0.03 0.05 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.06 -0.06 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 423

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 380

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 153

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages