Detailed information of deep learning profile BP000378.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in uterus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000378.1
Cell line/tissue: uterus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR798NVH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.11 0.03 0.05 0.12 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.12 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4359 4263 4439 5481 5282 4883 4697 4860 3898 5130 4935 3814 3987 3592 5803 6934 1955 8184 1810 940 1677 1571 241 6865 163 116 1045 7272 578 2408 150 1294 3580 4554 7572 5261 6006 4904 4565 4338 5194 4969 5868 8399 6284 3896 4500 4436 5394 5588 ]
C [ 5015 5125 5464 4341 4209 4854 5289 5162 5292 2912 2713 4507 5165 8261 4126 5120 5637 2075 5951 9595 686 16578 18691 10578 11255 18904 1628 1565 6606 3085 196 1277 8268 6679 2825 4809 3958 4334 4390 4221 3476 3002 4363 4233 4625 4627 3541 6506 6698 4934 ]
G [ 4965 4915 4551 4349 4076 4348 4445 5423 3684 6320 7799 6487 5431 3337 3600 3892 4711 6383 9733 915 14048 767 115 806 133 70 559 7352 10992 840 18447 14864 2135 3925 6227 4761 4172 4943 5390 6094 6664 7776 4746 3116 3705 3991 5964 4867 3403 4612 ]
T [ 5015 5051 4900 5183 5787 5269 4923 3909 6480 4992 3907 4546 4771 4164 5825 3408 7051 2712 1860 7904 2943 438 307 1105 7803 264 16122 3165 1178 13021 561 1919 5371 4196 2730 4523 5218 5173 5009 4701 4020 3607 4377 3606 4740 6840 5349 3545 3859 4220 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.04 -0.02 0.01 -0.02 0.02 -0.05 -0.03 -0.02 0.04 -0.04 -0.01 -0.05 -0.02 -0.01 0.00 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.08 0.11 0.07 0.09 0.13 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.03 0.03 -0.00 0.01 ]
G [ 0.01 -0.00 0.00 0.00 0.02 0.03 0.05 -0.02 0.09 -0.02 -0.03 -0.00 -0.05 -0.02 0.00 0.03 0.08 -0.02 0.12 0.08 -0.01 0.02 0.03 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.02 -0.00 -0.03 -0.03 -0.04 0.04 -0.03 0.07 -0.00 -0.01 0.03 -0.01 -0.00 0.02 -0.01 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 551

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 415

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 342

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 172

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages