Detailed information of deep learning profile BP000378.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in uterus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000378.1
Cell line/tissue: uterus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR798NVH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.12 0.05 0.03 0.11 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4220 3859 3545 5349 6840 4740 3606 4377 3607 4020 4701 5009 5173 5218 4523 2730 4196 5371 1919 561 13021 1178 3165 16122 264 7803 1105 307 438 2943 7904 1860 2712 7051 3408 5825 4164 4771 4546 3907 4992 6480 3909 4923 5269 5787 5183 4900 5051 5015 ]
C [ 4612 3403 4867 5964 3991 3705 3116 4746 7776 6664 6094 5390 4943 4172 4761 6227 3925 2135 14864 18447 840 10992 7352 559 70 133 806 115 767 14048 915 9733 6383 4711 3892 3600 3337 5431 6487 7799 6320 3684 5423 4445 4348 4076 4349 4551 4915 4965 ]
G [ 4934 6698 6506 3541 4627 4625 4233 4363 3002 3476 4221 4390 4334 3958 4809 2825 6679 8268 1277 196 3085 6606 1565 1628 18904 11255 10578 18691 16578 686 9595 5951 2075 5637 5120 4126 8261 5165 4507 2713 2912 5292 5162 5289 4854 4209 4341 5464 5125 5015 ]
T [ 5588 5394 4436 4500 3896 6284 8399 5868 4969 5194 4338 4565 4904 6006 5261 7572 4554 3580 1294 150 2408 578 7272 1045 116 163 6865 241 1571 1677 940 1810 8184 1955 6934 5803 3592 3987 3814 4935 5130 3898 4860 4697 4883 5282 5481 4439 4263 4359 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.01 0.02 -0.00 -0.01 0.03 -0.01 -0.00 0.07 -0.03 0.04 -0.04 -0.03 -0.03 -0.00 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.03 0.02 -0.01 0.08 0.12 -0.02 0.08 0.03 0.00 -0.02 -0.05 -0.00 -0.03 -0.02 0.09 -0.02 0.05 0.03 0.02 0.00 0.00 -0.00 0.01 ]
G [ 0.01 -0.00 0.03 0.03 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.13 0.09 0.07 0.11 0.08 -0.02 0.09 0.03 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.00 -0.01 -0.02 -0.05 -0.01 -0.04 0.04 -0.02 -0.03 -0.05 0.02 -0.02 0.01 -0.02 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 551

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 415

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 342

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 172

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages