Detailed information of deep learning profile BP000377.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000377.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR793YAD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.04 -0.00 -0.01 0.08 0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.00 -0.00 0.12 0.19 -0.00 0.05 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.10 -0.00 0.04 0.01 0.01 ]
G [ 0.00 -0.00 0.02 0.03 -0.00 0.00 0.01 0.01 -0.00 0.00 0.20 0.08 0.05 0.19 0.11 -0.00 0.06 0.01 -0.00 0.01 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 20 18 15 16 16 20 22 16 19 18 21 17 22 19 19 11 6 2 3 51 34 8 15 19 10 19 22 21 30 19 24 11 13 25 6 4 61 5 22 65 0 39 6 1 2 13 34 5 5 30 ]
C [ 17 20 21 26 26 23 16 30 28 21 22 22 22 23 18 41 5 2 60 9 16 9 5 33 56 28 25 31 18 19 20 25 13 5 70 78 2 40 23 5 1 0 0 0 3 57 6 49 32 22 ]
G [ 24 30 26 17 18 15 24 23 23 27 19 27 18 23 28 23 9 77 6 5 27 4 18 12 3 14 26 17 17 12 15 7 47 47 3 0 13 36 8 9 81 44 38 83 67 4 39 22 11 28 ]
T [ 23 16 22 25 24 26 22 15 14 18 22 18 22 19 19 9 64 3 15 19 7 63 46 20 15 23 11 15 19 34 25 41 11 7 5 2 8 3 31 5 2 1 40 0 12 10 5 8 36 4 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.01 -0.00 -0.03 -0.02 0.03 -0.01 -0.03 0.06 -0.03 -0.01 0.10 -0.05 0.07 -0.08 -0.05 -0.05 -0.01 0.03 -0.02 -0.02 0.03 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.14 0.21 -0.04 0.13 0.06 0.00 -0.03 -0.08 -0.00 -0.04 -0.03 0.14 -0.01 0.08 0.05 0.03 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.04 0.06 -0.04 -0.03 0.10 0.05 -0.02 0.03 0.20 0.16 0.12 0.19 0.14 -0.03 0.15 0.06 -0.00 0.03 ]
T [ -0.00 0.00 0.01 0.01 0.03 -0.00 -0.02 -0.04 -0.09 -0.03 -0.05 0.07 -0.04 -0.05 -0.08 0.03 -0.05 0.01 -0.03 -0.07 -0.01 0.03 -0.04 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 19980

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 135

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000011.1 CTCF ENCSR000ANS myotube Homo sapiens MA0139.2
BP000012.1 CTCF ENCSR000AOA HeLa-S3 Homo sapiens MA0139.2
BP000013.1 CTCF ENCSR000AOO astrocyte Homo sapiens MA0139.2
BP000014.1 CTCF ENCSR000APF osteoblast Homo sapiens MA0139.2
BP000015.1 CTCF ENCSR000APM fibroblast of dermis Homo sapiens MA0139.2
BP000016.1 CTCF ENCSR000AQU DND-41 Homo sapiens MA0139.2
BP000017.1 CTCF ENCSR000ATN CD14-positive monocyte Homo sapiens MA0139.2
BP000018.1 CTCF ENCSR000AUE A549 Homo sapiens MA0139.2
BP000019.1 CTCF ENCSR000AUF A549 Homo sapiens MA0139.2
BP000020.1 CTCF ENCSR000AUV B cell Homo sapiens MA0139.2
Showing 10 profiles of page 2 from 45 pages