Detailed information of deep learning profile BP000375.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neutrophil using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000375.1
Cell line/tissue: neutrophil
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR785YRL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.14 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3405 3317 3348 4308 4089 3862 3763 3775 3009 3963 3729 2891 3055 2714 4520 5446 1536 6477 1381 698 1278 1156 185 5627 125 71 604 5830 340 1746 46 789 2644 3479 6930 4143 5086 3926 3328 3238 4199 3713 4970 8003 5506 2782 3524 3204 4751 4682 ]
C [ 4684 4872 5100 4166 3848 4447 4818 4731 4867 2627 2380 4110 4670 7603 3866 4882 4988 2052 5179 8788 736 14310 16180 9872 10416 16544 1142 1069 5356 2714 45 760 8063 6804 2203 4627 3387 3847 4058 3829 2913 2370 4042 3780 4187 4291 2716 6552 6608 4456 ]
G [ 4678 4535 4374 4138 4025 4176 4244 5127 3487 6031 7416 6127 5013 3060 3341 3687 4316 6080 8661 884 12715 801 158 547 66 33 382 7435 10358 488 16530 13902 1604 3394 5766 4242 4015 4776 5363 5819 6755 8268 4230 2425 3140 3500 6156 4594 2821 4479 ]
T [ 3994 4037 3939 4149 4799 4276 3936 3128 5398 4140 3236 3633 4023 3384 5034 2746 5921 2152 1540 6391 2032 494 238 715 6154 113 14633 2427 707 11813 140 1310 4450 3084 1862 3749 4273 4212 4012 3875 2894 2410 3519 2553 3928 6188 4365 2411 2581 3144 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.02 0.00 -0.03 0.02 -0.06 -0.04 -0.04 0.06 -0.06 -0.02 -0.08 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 -0.01 0.02 0.02 -0.01 0.03 0.11 -0.03 0.10 0.14 0.08 0.11 0.15 0.02 -0.02 0.05 0.09 -0.01 -0.02 0.06 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.02 0.11 -0.01 -0.03 0.01 -0.06 -0.01 -0.01 0.04 0.09 -0.04 0.17 0.11 -0.01 0.03 0.05 0.02 0.02 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.01 0.03 -0.01 -0.02 0.02 -0.00 -0.04 -0.04 -0.05 0.05 -0.04 0.10 0.00 -0.01 0.04 -0.03 -0.01 0.03 -0.01 -0.02 0.00 0.01 0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3573

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 877

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 594

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 567

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 558

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 460

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages