Detailed information of deep learning profile BP000375.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in neutrophil using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000375.1
Cell line/tissue: neutrophil
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR785YRL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3144 2581 2411 4365 6188 3928 2553 3519 2410 2894 3875 4012 4212 4273 3749 1862 3084 4450 1310 140 11813 707 2427 14633 113 6154 715 238 494 2032 6391 1540 2152 5921 2746 5034 3384 4023 3633 3236 4140 5398 3128 3936 4276 4799 4149 3939 4037 3994 ]
C [ 4479 2821 4594 6156 3500 3140 2425 4230 8268 6755 5819 5363 4776 4015 4242 5766 3394 1604 13902 16530 488 10358 7435 382 33 66 547 158 801 12715 884 8661 6080 4316 3687 3341 3060 5013 6127 7416 6031 3487 5127 4244 4176 4025 4138 4374 4535 4678 ]
G [ 4456 6608 6552 2716 4291 4187 3780 4042 2370 2913 3829 4058 3847 3387 4627 2203 6804 8063 760 45 2714 5356 1069 1142 16544 10416 9872 16180 14310 736 8788 5179 2052 4988 4882 3866 7603 4670 4110 2380 2627 4867 4731 4818 4447 3848 4166 5100 4872 4684 ]
T [ 4682 4751 3204 3524 2782 5506 8003 4970 3713 4199 3238 3328 3926 5086 4143 6930 3479 2644 789 46 1746 340 5830 604 71 125 5627 185 1156 1278 698 1381 6477 1536 5446 4520 2714 3055 2891 3729 3963 3009 3775 3763 3862 4089 4308 3348 3317 3405 ]

Hypothetical CWM

   
A [ -0.01 0.01 0.01 0.00 -0.02 -0.01 0.03 -0.01 -0.03 0.04 -0.01 0.00 0.10 -0.04 0.05 -0.05 -0.04 -0.04 -0.00 0.02 -0.02 -0.01 0.03 -0.01 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.02 0.02 0.05 0.03 -0.01 0.11 0.17 -0.04 0.09 0.04 -0.01 -0.01 -0.06 0.01 -0.03 -0.01 0.11 -0.02 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.06 -0.02 -0.01 0.09 0.05 -0.02 0.02 0.15 0.11 0.08 0.14 0.10 -0.03 0.11 0.03 -0.01 0.02 0.02 -0.01 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.08 -0.02 -0.06 0.06 -0.04 -0.04 -0.06 0.02 -0.03 0.00 -0.02 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3573

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 877

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 594

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 567

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 558

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 460

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages