Detailed information of deep learning profile BP000373.1

  1. Home
  2. Deep Learning Profile > BP000373.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000373.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR779YTI
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.18 -0.00 0.06 0.02 0.00 -0.00 0.00 0.00 0.00 0.00 0.10 -0.00 0.04 0.01 0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.07 0.06 0.18 0.12 -0.00 0.06 0.01 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4257 3841 3771 4997 6095 4678 3720 4283 3715 4129 4563 4624 4735 4958 4227 2894 4294 5024 2176 561 11733 1577 3294 14505 436 6987 1400 336 531 2998 7188 1804 2851 6518 3252 5390 4153 4741 4301 4225 4833 5739 4113 4766 5049 5242 4973 4804 4895 4843 ]
C [ 4523 3795 4923 5621 4187 4032 3633 4669 7144 6285 5661 5260 5054 4478 5000 6336 4255 2519 13634 17988 1284 9685 6763 684 134 290 991 157 1028 13486 1180 9516 6032 4400 4262 3798 3567 5031 6030 6795 5820 4137 5143 4520 4460 4431 4555 4653 4805 4787 ]
G [ 4884 6168 5976 3939 4582 4564 4334 4542 3391 3686 4379 4575 4460 4078 4901 3180 5860 7948 1635 260 2954 6939 1822 2199 18226 11480 10509 18225 15870 856 9518 5475 2294 5795 4757 4157 7724 5261 4876 3208 3493 5005 5239 5175 5013 4496 4434 5210 5094 5001 ]
T [ 5353 5213 4347 4460 4153 5743 7330 5523 4767 4917 4414 4558 4768 5503 4889 6607 4608 3526 1572 208 3046 816 7138 1629 221 260 6117 299 1588 1677 1131 2222 7840 2304 6746 5672 3573 3984 3810 4789 4871 4136 4522 4556 4495 4848 5055 4350 4223 4386 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.02 0.02 -0.00 -0.03 0.04 -0.03 -0.01 0.09 -0.04 0.05 -0.07 -0.05 -0.05 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.02 0.03 0.06 0.05 0.00 0.12 0.19 -0.01 0.13 0.07 0.01 -0.02 -0.04 0.02 -0.02 -0.02 0.15 -0.01 0.08 0.06 0.04 0.02 0.01 0.01 0.03 0.03 ]
G [ 0.01 0.02 0.02 0.03 0.01 0.05 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.04 0.18 0.14 0.11 0.19 0.15 -0.01 0.15 0.06 0.00 0.04 0.03 0.01 0.04 0.02 0.02 ]
T [ 0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.06 -0.03 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1211

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 621

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 556

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 515

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 443

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 313

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 289

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 140

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages