Detailed information of deep learning profile BP000372.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000372.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR778ZPK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.09 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.19 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.18 0.08 0.06 0.18 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3447 3159 3025 4068 5245 3761 3067 3561 3013 3226 3731 3820 3867 3976 3426 2352 3579 4148 1685 702 9620 1220 2549 12378 273 5700 1250 249 389 2475 6166 1581 2285 5369 2726 4397 3415 3955 3371 3364 3950 4740 3302 3875 3971 4303 4074 3970 3939 3989 ]
C [ 3749 2999 4027 4818 3380 3245 2868 3894 6003 5277 4703 4317 4177 3820 4155 5201 3316 1991 11532 14491 1001 7897 5966 488 79 147 754 59 562 11010 968 7668 5019 3751 3246 3089 2935 4041 4968 5604 4823 3395 4197 3739 3651 3628 3747 3882 3945 3844 ]
G [ 3965 5196 5025 3089 3690 3841 3534 3651 2678 3065 3530 3716 3573 3244 3883 2597 4921 6493 1253 201 2435 5878 1478 1620 15086 9550 8368 15087 13356 632 7406 4640 1762 4640 4160 3405 6360 4231 4108 2698 2826 4111 4228 4264 4130 3658 3747 4243 4214 4188 ]
T [ 4413 4220 3497 3599 3259 4727 6105 4468 3880 4006 3610 3721 3957 4534 4110 5424 3758 2942 1104 180 2518 579 5581 1088 136 177 5202 179 1267 1457 1034 1685 6508 1814 5442 4683 2864 3347 3127 3908 3975 3328 3847 3696 3822 3985 4006 3479 3476 3553 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.05 -0.03 -0.02 0.11 -0.06 0.05 -0.07 -0.06 -0.05 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.06 0.04 -0.02 0.13 0.20 -0.03 0.13 0.06 -0.01 -0.02 -0.08 -0.00 -0.04 -0.03 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.06 -0.03 -0.03 0.08 0.05 -0.02 0.03 0.19 0.14 0.11 0.18 0.13 -0.03 0.13 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.03 -0.00 -0.02 -0.04 -0.09 -0.03 -0.06 0.07 -0.04 -0.04 -0.07 0.03 -0.04 0.00 -0.02 -0.07 -0.02 0.03 -0.04 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3484

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 865

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 187

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 74

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages