Detailed information of deep learning profile BP000371.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000371.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR778NDP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.03 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.19 -0.00 0.06 0.02 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.11 -0.00 0.04 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.20 0.08 0.06 0.19 0.14 -0.00 0.07 0.02 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 3907 5165 6452 4776 3863 4429 3922 4164 4717 4710 4964 5112 4412 3002 4444 5271 2190 916 12126 1595 3334 15220 373 7707 1333 337 380 2956 7779 1748 2671 6909 3274 5648 4296 4969 4346 4164 5021 6168 4067 5037 5200 5550 5216 5038 5057 4979 5058 4842 ]
C [ 4878 5730 4154 4002 3532 4796 7197 6481 5771 5383 5091 4549 5021 6166 4228 2484 13963 17925 1248 9944 6950 675 115 154 973 87 637 14217 860 10142 6372 4660 4155 3786 3520 5157 6282 7338 6154 4038 5302 4492 4436 4395 4520 4673 4835 4898 4885 4951 ]
G [ 6065 3958 4604 4636 4436 4557 3397 3740 4420 4732 4514 4119 4957 3272 6200 8097 1732 378 3167 7114 1876 2056 18757 11402 10547 18832 16893 665 9798 5652 1946 5773 4930 4092 8147 5175 4946 2981 3224 5202 5344 5341 5141 4465 4472 5247 5274 5137 4918 5109 ]
T [ 4626 4623 4266 6062 7645 5694 4960 5091 4568 4651 4907 5696 5086 7036 4604 3624 1591 257 2935 823 7316 1525 231 213 6623 220 1566 1638 1039 1934 8487 2134 7117 5950 3513 4175 3902 4993 5077 4068 4763 4606 4699 5066 5268 4518 4310 4462 4615 4574 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.02 0.10 -0.05 0.07 -0.07 -0.05 -0.06 -0.01 0.03 -0.03 -0.02 0.04 -0.02 0.02 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.00 0.13 0.20 -0.02 0.13 0.07 0.01 -0.02 -0.06 0.01 -0.03 -0.02 0.16 -0.01 0.09 0.06 0.05 0.02 0.01 0.01 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.01 -0.02 0.10 0.07 -0.01 0.04 0.21 0.15 0.12 0.20 0.16 -0.02 0.16 0.06 -0.00 0.04 0.03 0.00 0.05 0.02 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.08 -0.02 -0.05 0.07 -0.03 -0.04 -0.09 0.04 -0.04 0.01 -0.03 -0.07 -0.01 0.04 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 737

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 521

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 344

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 183

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages