Detailed information of deep learning profile BP000371.1

  1. Home
  2. Deep Learning Profile > BP000371.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000371.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR778NDP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.02 0.07 -0.00 0.14 0.19 0.06 0.08 0.20 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.01 0.04 -0.00 0.11 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.02 0.06 -0.00 0.19 0.09 -0.00 0.01 0.01 0.00 ]
T [ 0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.03 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4574 4615 4462 4310 4518 5268 5066 4699 4606 4763 4068 5077 4993 3902 4175 3513 5950 7117 2134 8487 1934 1039 1638 1566 220 6623 213 231 1525 7316 823 2935 257 1591 3624 4604 7036 5086 5696 4907 4651 4568 5091 4960 5694 7645 6062 4266 4623 4626 ]
C [ 5109 4918 5137 5274 5247 4472 4465 5141 5341 5344 5202 3224 2981 4946 5175 8147 4092 4930 5773 1946 5652 9798 665 16893 18832 10547 11402 18757 2056 1876 7114 3167 378 1732 8097 6200 3272 4957 4119 4514 4732 4420 3740 3397 4557 4436 4636 4604 3958 6065 ]
G [ 4951 4885 4898 4835 4673 4520 4395 4436 4492 5302 4038 6154 7338 6282 5157 3520 3786 4155 4660 6372 10142 860 14217 637 87 973 154 115 675 6950 9944 1248 17925 13963 2484 4228 6166 5021 4549 5091 5383 5771 6481 7197 4796 3532 4002 4154 5730 4878 ]
T [ 4842 5058 4979 5057 5038 5216 5550 5200 5037 4067 6168 5021 4164 4346 4969 4296 5648 3274 6909 2671 1748 7779 2956 380 337 1333 7707 373 15220 3334 1595 12126 916 2190 5271 4444 3002 4412 5112 4964 4710 4717 4164 3922 4429 3863 4776 6452 5165 3907 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.01 -0.07 -0.03 0.01 -0.04 0.04 -0.09 -0.04 -0.03 0.07 -0.05 -0.02 -0.08 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.00 0.03 0.04 -0.00 0.06 0.16 -0.02 0.16 0.20 0.12 0.15 0.21 0.04 -0.01 0.07 0.10 -0.02 -0.01 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.01 0.01 0.02 0.05 0.06 0.09 -0.01 0.16 -0.02 -0.03 0.01 -0.06 -0.02 0.01 0.07 0.13 -0.02 0.20 0.13 -0.00 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.02 -0.02 0.04 -0.02 -0.03 0.03 -0.01 -0.06 -0.05 -0.07 0.07 -0.05 0.10 -0.02 -0.02 0.04 -0.02 -0.00 0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 737

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 521

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 359

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 344

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 183

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages