Detailed information of deep learning profile BP000369.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus squamous epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000369.1
Cell line/tissue: esophagus squamous epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR773JBP
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.14 0.05 0.04 0.13 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4415 3828 3730 5347 6946 4917 3688 4463 3643 4107 4707 4942 5082 5100 4449 2933 4357 5494 1902 640 12663 1275 3193 15809 283 7254 1378 392 786 3175 7608 2152 2937 6744 3605 5704 4329 4925 4436 4244 5125 6202 4139 4858 5269 5590 5273 5025 4997 5028 ]
C [ 4598 3419 4998 6175 4099 3841 3176 4716 7977 6827 5992 5543 5100 4524 5178 6433 4245 2213 15134 18594 997 10802 7462 573 87 239 938 250 1367 13160 1574 9316 6136 4728 4021 3794 3595 5191 6331 7236 6020 4075 5347 4631 4381 4385 4522 4719 4829 4943 ]
G [ 4852 6727 6505 3569 4559 4670 4198 4450 3106 3432 4285 4429 4302 3944 4734 2968 6176 8228 1291 166 3009 6877 1562 1894 19020 11789 10636 18531 15727 1192 9148 5824 2350 5637 5088 4391 7963 5296 4789 3071 3354 5132 5203 5228 5108 4513 4489 5347 5279 5074 ]
T [ 5678 5569 4310 4452 3939 6115 8481 5914 4817 5177 4559 4629 5059 5975 5182 7209 4765 3608 1216 143 2874 589 7326 1267 153 261 6591 370 1663 2016 1213 2251 8120 2434 6829 5654 3656 4131 3987 4992 5044 4134 4854 4826 4785 5055 5259 4452 4438 4498 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.04 -0.04 -0.04 -0.03 -0.01 0.02 -0.02 -0.01 0.02 -0.02 0.01 -0.00 -0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.02 0.09 0.04 0.00 -0.01 -0.05 0.01 -0.02 -0.02 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.03 0.04 -0.02 -0.02 0.06 0.05 -0.01 0.02 0.15 0.10 0.08 0.13 0.10 -0.02 0.09 0.04 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.03 -0.03 -0.06 0.02 -0.03 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 492

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 215

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 61

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages