Detailed information of deep learning profile BP000368.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000368.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR770IWO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.06 0.16 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3658 3474 3618 4234 4009 3821 3805 3904 3257 3966 3994 3097 3373 2916 4638 5405 1871 6580 1648 1022 1461 1211 202 5418 191 133 1130 5719 557 2475 178 1063 2924 3726 5700 4192 4633 4081 3771 3598 4148 3942 4649 6270 4879 3230 3685 3611 4423 4526 ]
C [ 4013 4091 4087 3545 3497 4016 4124 4114 3962 2694 2575 3916 4072 6198 3256 4065 4479 1648 4683 6959 550 13412 14913 7957 9013 14955 1588 1302 5643 1935 155 1124 6271 4810 2487 3666 3114 3401 3501 3395 2890 2562 3463 3323 3535 3638 2936 4870 5049 3712 ]
G [ 3682 3802 3630 3451 3535 3405 3455 3987 3197 4611 5452 4836 3956 2805 2912 3074 3462 4858 7351 1041 10920 401 53 729 155 73 414 5768 7993 862 14471 11527 1868 3287 4813 3918 3592 3926 4140 4574 5099 5875 3699 2704 3061 3195 4520 3869 2691 3620 ]
T [ 4042 4028 4060 4165 4354 4153 4011 3390 4979 4124 3374 3546 3994 3476 4589 2851 5583 2309 1713 6373 2464 371 227 1291 6036 234 12263 2606 1202 10123 591 1681 4332 3572 2395 3619 4056 3987 3983 3828 3258 3016 3584 3098 3920 5332 4254 3045 3232 3537 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.04 -0.01 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.04 -0.00 0.02 0.02 -0.01 0.04 0.10 -0.02 0.11 0.15 0.08 0.11 0.16 0.02 -0.02 0.04 0.07 -0.03 -0.03 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.05 -0.01 0.11 -0.03 -0.03 0.00 -0.06 -0.02 -0.00 0.05 0.10 -0.03 0.16 0.11 -0.02 0.03 0.04 0.02 0.01 ]
T [ -0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.05 -0.05 0.04 -0.04 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5072

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 394

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages