Detailed information of deep learning profile BP000368.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in adrenal gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000368.1
Cell line/tissue: adrenal gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR770IWO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.16 0.06 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3537 3232 3045 4254 5332 3920 3098 3584 3016 3258 3828 3983 3987 4056 3619 2395 3572 4332 1681 591 10123 1202 2606 12263 234 6036 1291 227 371 2464 6373 1713 2309 5583 2851 4589 3476 3994 3546 3374 4124 4979 3390 4011 4153 4354 4165 4060 4028 4042 ]
C [ 3620 2691 3869 4520 3195 3061 2704 3699 5875 5099 4574 4140 3926 3592 3918 4813 3287 1868 11527 14471 862 7993 5768 414 73 155 729 53 401 10920 1041 7351 4858 3462 3074 2912 2805 3956 4836 5452 4611 3197 3987 3455 3405 3535 3451 3630 3802 3682 ]
G [ 3712 5049 4870 2936 3638 3535 3323 3463 2562 2890 3395 3501 3401 3114 3666 2487 4810 6271 1124 155 1935 5643 1302 1588 14955 9013 7957 14913 13412 550 6959 4683 1648 4479 4065 3256 6198 4072 3916 2575 2694 3962 4114 4124 4016 3497 3545 4087 4091 4013 ]
T [ 4526 4423 3611 3685 3230 4879 6270 4649 3942 4148 3598 3771 4081 4633 4192 5700 3726 2924 1063 178 2475 557 5719 1130 133 191 5418 202 1211 1461 1022 1648 6580 1871 5405 4638 2916 3373 3097 3994 3966 3257 3904 3805 3821 4009 4234 3618 3474 3658 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.04 0.04 -0.05 -0.05 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 -0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.02 0.11 0.16 -0.03 0.10 0.05 -0.00 -0.02 -0.06 0.00 -0.03 -0.03 0.11 -0.01 0.05 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.03 0.07 0.04 -0.02 0.02 0.16 0.11 0.08 0.15 0.11 -0.02 0.10 0.04 -0.01 0.02 0.02 -0.00 0.04 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.01 -0.04 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.03 0.00 -0.02 -0.05 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5072

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 394

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 27

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages