Detailed information of deep learning profile BP000367.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000367.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR769WKR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.04 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4061 3564 3380 5022 6469 4510 3370 4226 3340 3935 4323 4589 4665 4704 4109 2590 3977 5032 1795 499 11946 1180 2822 14630 305 6690 1382 562 838 2892 7144 2086 2803 6232 3336 5245 3910 4642 4169 3918 4657 5765 3862 4587 4861 5176 4782 4673 4729 4738 ]
C [ 4250 3204 4506 5607 3759 3523 2925 4292 7506 6256 5597 4999 4735 4187 4719 5959 3820 2049 13817 17172 968 10016 7051 583 139 255 973 426 1020 12322 1304 8527 5724 4364 3634 3492 3279 4839 5789 6711 5663 3695 4905 4214 4083 4027 4153 4271 4510 4583 ]
G [ 4517 6178 6135 3289 4285 4321 3833 4097 2842 3096 4027 4132 3950 3597 4414 2707 5913 7636 1249 210 2446 6273 1488 1622 17395 10775 9475 16544 14523 979 8358 5421 2223 5187 4889 4094 7333 4873 4449 2864 3070 4713 4778 4856 4698 4171 4193 4958 4760 4629 ]
T [ 5223 5105 4030 4133 3538 5697 7923 5436 4363 4764 4104 4331 4701 5563 4809 6795 4341 3334 1190 170 2691 582 6690 1216 212 331 6221 519 1670 1858 1245 2017 7301 2268 6192 5220 3529 3697 3644 4558 4661 3878 4506 4394 4409 4677 4923 4149 4052 4101 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.01 0.08 -0.05 0.05 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.01 0.11 0.17 -0.02 0.11 0.05 0.01 -0.02 -0.06 0.00 -0.02 -0.03 0.11 -0.01 0.06 0.04 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.00 0.03 0.05 -0.02 -0.02 0.07 0.05 -0.01 0.02 0.17 0.12 0.09 0.15 0.11 -0.02 0.11 0.04 -0.00 0.03 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.05 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 321

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 89

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages