Detailed information of deep learning profile BP000367.1

  1. Home
  2. Deep Learning Profile > BP000367.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000367.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR769WKR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.04 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4101 4052 4149 4923 4677 4409 4394 4506 3878 4661 4558 3644 3697 3529 5220 6192 2268 7301 2017 1245 1858 1670 519 6221 331 212 1216 6690 582 2691 170 1190 3334 4341 6795 4809 5563 4701 4331 4104 4764 4363 5436 7923 5697 3538 4133 4030 5105 5223 ]
C [ 4629 4760 4958 4193 4171 4698 4856 4778 4713 3070 2864 4449 4873 7333 4094 4889 5187 2223 5421 8358 979 14523 16544 9475 10775 17395 1622 1488 6273 2446 210 1249 7636 5913 2707 4414 3597 3950 4132 4027 3096 2842 4097 3833 4321 4285 3289 6135 6178 4517 ]
G [ 4583 4510 4271 4153 4027 4083 4214 4905 3695 5663 6711 5789 4839 3279 3492 3634 4364 5724 8527 1304 12322 1020 426 973 255 139 583 7051 10016 968 17172 13817 2049 3820 5959 4719 4187 4735 4999 5597 6256 7506 4292 2925 3523 3759 5607 4506 3204 4250 ]
T [ 4738 4729 4673 4782 5176 4861 4587 3862 5765 4657 3918 4169 4642 3910 5245 3336 6232 2803 2086 7144 2892 838 562 1382 6690 305 14630 2822 1180 11946 499 1795 5032 3977 2590 4109 4704 4665 4589 4323 3935 3340 4226 3370 4510 6469 5022 3380 3564 4061 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.05 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.00 0.04 0.11 -0.02 0.11 0.15 0.09 0.12 0.17 0.02 -0.01 0.05 0.07 -0.02 -0.02 0.05 0.03 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.04 0.06 -0.01 0.11 -0.03 -0.02 0.00 -0.06 -0.02 0.01 0.05 0.11 -0.02 0.17 0.11 -0.01 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.05 -0.05 0.08 -0.01 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 910

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 321

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 89

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000041.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000042.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000043.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000044.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000045.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000046.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000047.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000048.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000049.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000050.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages