Detailed information of deep learning profile BP000363.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus squamous epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000363.1
Cell line/tissue: esophagus squamous epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR756URL
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4270 3789 3579 5152 6574 4701 3622 4395 3559 4006 4574 4738 4889 4839 4331 2795 4184 5262 1923 653 12108 1378 3011 15375 276 7027 1258 335 612 3030 7414 1974 2768 6615 3391 5453 4139 4734 4348 4017 4900 5976 4041 4829 5047 5328 4964 4855 4841 4867 ]
C [ 4414 3335 4704 5722 3884 3648 3109 4463 7493 6444 5728 5208 4822 4369 4817 6067 4007 2054 14186 17672 1071 10166 7104 558 96 215 719 158 1100 12992 1281 9267 5908 4452 3889 3504 3455 5009 5929 6911 5806 3902 4980 4321 4197 4210 4305 4408 4670 4635 ]
G [ 4602 6293 6120 3446 4365 4362 3997 4196 2975 3275 4061 4263 4122 3745 4549 2928 5926 7889 1326 216 2834 6558 1461 1689 18239 11269 10460 17960 15449 932 8949 5423 2038 5428 4739 4093 7573 4944 4645 2964 3169 4899 4990 5044 4766 4252 4290 5080 4958 4874 ]
T [ 5451 5320 4334 4417 3914 6026 8009 5683 4710 5012 4374 4528 4904 5784 5040 6947 4620 3532 1302 196 2724 635 7161 1115 126 226 6300 284 1576 1783 1093 2073 8023 2242 6718 5687 3570 4050 3815 4845 4862 3960 4726 4543 4727 4947 5178 4394 4268 4361 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.04 -0.02 -0.01 0.08 -0.05 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.04 0.03 -0.01 0.10 0.15 -0.02 0.10 0.04 -0.00 -0.01 -0.05 -0.01 -0.03 -0.03 0.11 -0.02 0.06 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.07 0.05 -0.02 0.01 0.15 0.11 0.09 0.14 0.11 -0.02 0.11 0.04 -0.01 0.02 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.05 -0.04 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 449

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages