Detailed information of deep learning profile BP000360.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in testis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000360.1
Cell line/tissue: testis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR753RME
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.15 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4314 4247 4285 5040 4912 4625 4519 4619 3891 4728 4796 3747 4065 3528 5502 6573 2449 7754 2264 1311 1878 1654 444 5843 265 141 1124 7261 595 2694 174 1263 3448 4418 6924 5144 5673 4931 4409 4286 4958 4556 5563 8226 6025 3705 4398 4194 5300 5473 ]
C [ 4683 4637 4848 4101 4039 4561 4754 4743 4673 3161 2829 4568 4728 7223 3951 4542 5103 1955 5086 8220 1018 14493 17041 10376 10963 17721 1593 1267 6351 2356 185 1232 7711 5899 2750 4300 3578 3947 4105 3879 3091 2739 3956 3778 4130 4103 3134 6093 6129 4388 ]
G [ 4418 4532 4221 4104 4082 4045 4147 4789 3773 5332 6324 5577 4653 3288 3320 3610 4195 5627 8750 1448 12138 1155 229 665 154 78 414 6714 9934 992 17203 13873 1904 3762 5735 4562 4076 4497 5057 5463 6290 7425 4383 2795 3341 3613 5534 4440 3062 4101 ]
T [ 4764 4763 4825 4934 5146 4948 4759 4028 5842 4958 4230 4287 4733 4140 5406 3454 6432 2843 2079 7200 3145 877 465 1295 6797 239 15048 2937 1299 12137 617 1811 5116 4100 2770 4173 4852 4804 4608 4551 3840 3459 4277 3380 4683 6758 5113 3452 3688 4217 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.03 0.00 -0.04 0.02 -0.06 -0.03 -0.04 0.06 -0.06 -0.02 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.11 -0.02 0.11 0.16 0.09 0.12 0.16 0.02 -0.02 0.05 0.07 -0.02 -0.02 0.05 0.04 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.11 -0.03 -0.04 -0.00 -0.06 -0.03 -0.02 0.05 0.11 -0.03 0.17 0.11 -0.02 0.03 0.05 0.02 0.00 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.01 -0.04 -0.04 -0.06 0.04 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 22

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages