Detailed information of deep learning profile BP000360.1

  1. Home
  2. Deep Learning Profile > BP000360.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in testis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000360.1
Cell line/tissue: testis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR753RME
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4217 3688 3452 5113 6758 4683 3380 4277 3459 3840 4551 4608 4804 4852 4173 2770 4100 5116 1811 617 12137 1299 2937 15048 239 6797 1295 465 877 3145 7200 2079 2843 6432 3454 5406 4140 4733 4287 4230 4958 5842 4028 4759 4948 5146 4934 4825 4763 4764 ]
C [ 4101 3062 4440 5534 3613 3341 2795 4383 7425 6290 5463 5057 4497 4076 4562 5735 3762 1904 13873 17203 992 9934 6714 414 78 154 665 229 1155 12138 1448 8750 5627 4195 3610 3320 3288 4653 5577 6324 5332 3773 4789 4147 4045 4082 4104 4221 4532 4418 ]
G [ 4388 6129 6093 3134 4103 4130 3778 3956 2739 3091 3879 4105 3947 3578 4300 2750 5899 7711 1232 185 2356 6351 1267 1593 17721 10963 10376 17041 14493 1018 8220 5086 1955 5103 4542 3951 7223 4728 4568 2829 3161 4673 4743 4754 4561 4039 4101 4848 4637 4683 ]
T [ 5473 5300 4194 4398 3705 6025 8226 5563 4556 4958 4286 4409 4931 5673 5144 6924 4418 3448 1263 174 2694 595 7261 1124 141 265 5843 444 1654 1878 1311 2264 7754 2449 6573 5502 3528 4065 3747 4796 4728 3891 4619 4519 4625 4912 5040 4285 4247 4314 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.04 -0.06 -0.04 -0.04 -0.01 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.00 0.02 0.05 0.03 -0.02 0.11 0.17 -0.03 0.11 0.05 -0.02 -0.03 -0.06 -0.00 -0.04 -0.03 0.11 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.05 -0.02 -0.02 0.07 0.05 -0.02 0.02 0.16 0.12 0.09 0.16 0.11 -0.02 0.11 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.02 -0.06 0.06 -0.04 -0.03 -0.06 0.02 -0.04 0.00 -0.03 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 22

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages