Detailed information of deep learning profile BP000359.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000359.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR744YJR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.06 0.10 0.03 0.04 0.11 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 0.00 0.06 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.04 -0.00 0.11 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4171 4145 4240 5104 4853 4576 4421 4542 3745 4748 4613 3685 3788 3377 5399 6355 2163 7535 1968 1130 1743 1589 383 6333 304 141 1117 6977 516 2500 168 1156 3341 4372 7074 4883 5615 4758 4243 4110 4853 4491 5614 8034 5983 3694 4219 4095 5277 5388 ]
C [ 4992 4997 5232 4337 4294 4785 5245 5062 5090 3159 2978 4486 5052 7840 4209 5047 5594 2354 5650 8765 1170 15099 17598 10203 11259 18199 1723 1460 6265 3152 190 1289 8159 6416 2819 4761 3868 4214 4344 4088 3333 2880 4343 4162 4462 4475 3404 6389 6577 4809 ]
G [ 4819 4795 4542 4496 4297 4435 4458 5252 3892 6113 7312 6210 5303 3501 3671 3954 4555 6118 9079 1505 13014 1328 315 996 274 111 599 7428 10906 934 17813 14523 2103 3986 6237 4779 4300 4905 5368 6024 6790 7912 4584 3142 3733 4008 6082 4855 3381 4496 ]
T [ 4726 4771 4694 4771 5264 4912 4584 3852 5981 4688 3805 4327 4565 3990 5429 3352 6396 2701 2011 7308 2781 692 412 1176 6871 257 15269 2843 1021 12122 537 1740 5105 3934 2578 4285 4925 4831 4753 4486 3732 3425 4167 3370 4530 6531 5003 3369 3473 4015 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.02 0.02 -0.01 -0.04 -0.02 0.00 -0.02 0.01 -0.05 -0.03 -0.02 0.04 -0.04 -0.02 -0.05 -0.03 -0.01 -0.00 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.07 -0.01 0.07 0.10 0.06 0.08 0.11 0.02 -0.01 0.03 0.05 -0.01 -0.01 0.04 0.03 0.00 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.04 -0.01 0.08 -0.01 -0.02 0.00 -0.04 -0.02 -0.00 0.03 0.07 -0.02 0.11 0.08 -0.01 0.02 0.03 0.02 0.01 ]
T [ -0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.01 0.01 -0.01 -0.03 -0.03 -0.04 0.03 -0.03 0.06 -0.01 -0.02 0.02 -0.02 -0.01 0.01 -0.01 -0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 51

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages