Detailed information of deep learning profile BP000359.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thyroid gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000359.1
Cell line/tissue: thyroid gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR744YJR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.11 -0.00 0.04 0.01 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.06 0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.11 0.04 0.03 0.10 0.06 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 4015 3473 3369 5003 6531 4530 3370 4167 3425 3732 4486 4753 4831 4925 4285 2578 3934 5105 1740 537 12122 1021 2843 15269 257 6871 1176 412 692 2781 7308 2011 2701 6396 3352 5429 3990 4565 4327 3805 4688 5981 3852 4584 4912 5264 4771 4694 4771 4726 ]
C [ 4496 3381 4855 6082 4008 3733 3142 4584 7912 6790 6024 5368 4905 4300 4779 6237 3986 2103 14523 17813 934 10906 7428 599 111 274 996 315 1328 13014 1505 9079 6118 4555 3954 3671 3501 5303 6210 7312 6113 3892 5252 4458 4435 4297 4496 4542 4795 4819 ]
G [ 4809 6577 6389 3404 4475 4462 4162 4343 2880 3333 4088 4344 4214 3868 4761 2819 6416 8159 1289 190 3152 6265 1460 1723 18199 11259 10203 17598 15099 1170 8765 5650 2354 5594 5047 4209 7840 5052 4486 2978 3159 5090 5062 5245 4785 4294 4337 5232 4997 4992 ]
T [ 5388 5277 4095 4219 3694 5983 8034 5614 4491 4853 4110 4243 4758 5615 4883 7074 4372 3341 1156 168 2500 516 6977 1117 141 304 6333 383 1589 1743 1130 1968 7535 2163 6355 5399 3377 3788 3685 4613 4748 3745 4542 4421 4576 4853 5104 4240 4145 4171 ]

Hypothetical CWM

   
A [ 0.00 -0.00 -0.01 -0.01 0.01 -0.01 -0.02 0.02 -0.02 -0.01 0.06 -0.03 0.03 -0.04 -0.03 -0.03 -0.01 0.01 -0.01 -0.02 0.02 -0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.02 0.03 0.02 -0.01 0.08 0.11 -0.02 0.07 0.03 -0.00 -0.02 -0.04 0.00 -0.02 -0.01 0.08 -0.01 0.04 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.00 0.03 0.04 -0.01 -0.01 0.05 0.03 -0.01 0.02 0.11 0.08 0.06 0.10 0.07 -0.01 0.07 0.03 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 -0.00 -0.01 -0.03 -0.05 -0.02 -0.04 0.04 -0.02 -0.03 -0.05 0.01 -0.02 0.00 -0.02 -0.04 -0.01 0.02 -0.02 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 51

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages