Detailed information of deep learning profile BP000358.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000358.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR740GKG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.16 -0.00 0.06 0.02 0.00 -0.00 0.00 0.00 -0.00 0.00 0.10 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.17 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4041 5173 6407 4848 3971 4509 3961 4238 4838 4890 4938 5088 4455 3077 4544 5297 2279 985 12103 1787 3353 15184 453 7373 1545 425 582 3231 7895 1933 2959 6722 3425 5608 4366 4959 4419 4370 5056 6040 4158 4990 5237 5567 5152 5139 5121 5105 5164 4893 ]
C [ 5046 5852 4285 4143 3686 4877 7316 6534 5848 5311 5077 4743 5180 6410 4342 2525 14105 18131 1369 10016 7102 616 98 217 823 110 1049 13964 1251 9650 6426 4714 4239 3870 3683 5082 6354 7221 6080 4124 5344 4700 4644 4463 4669 4778 4947 4976 4902 5046 ]
G [ 6109 4034 4726 4785 4564 4639 3579 3872 4499 4836 4696 4299 4962 3350 6167 8291 1760 373 3244 7091 1854 2240 18994 11896 11002 18925 16475 838 9348 5870 2230 5834 5021 4349 7991 5410 5033 3186 3457 5323 5332 5420 5169 4634 4610 5359 5303 5184 5114 5221 ]
T [ 4576 4713 4354 5996 7551 5747 4916 5128 4587 4735 5061 5642 5175 6935 4719 3659 1628 283 3056 878 7463 1732 227 286 6402 312 1666 1739 1278 2319 8157 2502 7087 5945 3732 4321 3966 4995 5179 4285 4938 4662 4722 5108 5341 4496 4401 4507 4592 4612 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 0.00 -0.02 -0.01 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.08 -0.03 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.00 0.12 0.17 -0.00 0.12 0.06 0.02 -0.01 -0.04 0.02 -0.04 -0.02 0.14 -0.01 0.07 0.05 0.04 0.02 0.01 0.01 0.02 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.01 0.04 0.06 -0.02 -0.01 0.08 0.06 -0.01 0.03 0.17 0.13 0.11 0.17 0.13 -0.02 0.13 0.05 -0.00 0.04 0.03 0.00 0.04 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.02 -0.06 -0.03 -0.05 0.06 -0.03 -0.03 -0.07 0.03 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.03 0.03 0.01 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 882

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 871

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 713

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 685

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 436

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 263

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 220

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 177

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 145

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages