Detailed information of deep learning profile BP000356.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000356.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR724YTA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.19 0.06 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.10 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.19 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4429 4413 4339 4227 4388 5110 4862 4570 4462 4669 4058 4885 4833 3857 4077 3514 5706 6753 2237 7857 2106 1092 1611 1627 284 6271 266 243 1645 7192 816 2952 256 1543 3505 4498 6686 5043 5475 4812 4519 4430 4876 4739 5501 7173 5844 4144 4441 4440 ]
C [ 5092 4997 5049 5144 5148 4453 4478 5016 5218 5199 5139 3373 3112 4735 5169 7834 4143 4947 5635 2182 5730 9156 840 15989 18260 10496 11300 18290 2156 1803 6848 3246 360 1754 8111 5993 3262 4831 4136 4521 4633 4365 3840 3491 4525 4467 4620 4567 3886 5900 ]
G [ 4889 4737 4814 4846 4641 4583 4362 4490 4566 5165 3996 5920 6963 6223 5081 3529 3824 4023 4548 6224 9420 1153 13655 919 120 852 238 115 645 6754 9777 1279 17515 13554 2473 4181 6131 4958 4589 4956 5226 5734 6229 6955 4771 3618 3964 4199 5686 4910 ]
T [ 4640 4903 4848 4833 4873 4904 5348 4974 4804 4017 5857 4872 4142 4235 4723 4173 5377 3327 6630 2787 1794 7649 2944 515 386 1431 7246 402 14604 3301 1609 11573 919 2199 4961 4378 2971 4218 4850 4761 4672 4521 4105 3865 4253 3792 4622 6140 5037 3800 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.05 0.03 -0.01 -0.07 -0.03 0.01 -0.04 0.03 -0.08 -0.04 -0.03 0.06 -0.05 -0.03 -0.08 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.05 0.00 0.03 0.04 0.00 0.06 0.15 -0.02 0.15 0.19 0.11 0.14 0.19 0.03 -0.01 0.06 0.09 -0.02 -0.02 0.07 0.04 0.01 0.03 0.02 0.02 0.02 ]
G [ 0.03 0.01 0.02 0.02 0.04 0.06 0.08 -0.01 0.15 -0.02 -0.03 0.02 -0.06 -0.03 0.01 0.07 0.13 -0.01 0.20 0.13 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.06 -0.05 -0.07 0.06 -0.05 0.09 -0.01 -0.02 0.04 -0.03 -0.00 0.02 -0.02 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 700

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 320

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 42

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages